View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1486_low_18 (Length: 328)
Name: NF1486_low_18
Description: NF1486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1486_low_18 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 35914735 - 35914419
Alignment:
| Q |
1 |
agggaatgcttggattgatgatgccacaggtttaaaggggttatttgattacctttggactcatgcgttgaactcggatcaaactcatgagttgattgag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35914735 |
agggaatgcttggattgatgatgccacaggtttaagggggttatttgattacctttggactcatgcgttgaactcggatcaaactcatgagttgattgag |
35914636 |
T |
|
| Q |
101 |
aagtattgcgacttcacttctgaaaacgtttcatcaatttgtatcaatgcaacacataaggccttccttgagcaaggaaagatagactcctataacatct |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35914635 |
aagtattgtgacttcacttctgaaaacgtttcatcaatttgtatcaatgcaacacataaggccttccttgagcaaggaaagatagactcctataacatct |
35914536 |
T |
|
| Q |
201 |
atgctccactatgtcatgactcttctctcaaaaatggctcaactggttatgtaactaatgattttgacccttgttctgattactatggtgctgcctatct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
35914535 |
atgctccactatgtcatgactcttctctcaaaaatggctcaactggttatgtaactaatgactttgacccttgttctgattactatggtgctgcctatct |
35914436 |
T |
|
| Q |
301 |
aaatacaccacaggttc |
317 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
35914435 |
aaatacaccagaggttc |
35914419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 35910300 - 35909981
Alignment:
| Q |
1 |
agggaatgcttggattgatgatgccacaggtttaaaggggttatttgattacctttggactcatgcgttgaactcggatcaaactcatgagttgattgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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|
| T |
35910300 |
agggaatgcttggattgatgatgccacaagtttaaaggggttttttgattacctttggactcatgctttgaactcagatcaaactcatgagttgattgag |
35910201 |
T |
|
| Q |
101 |
aagtattgcgacttcacttctgaaaacgtttcatcaatttgtatc---aatgcaacacataaggccttccttgagcaaggaaagatagactcctataaca |
197 |
Q |
| |
|
||||| || ||||||||| ||||||| |||||| ||||||||||| |||| ||||| ||||||||| |||| || ||||||||||||| ||||||| |
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|
| T |
35910200 |
aagtactgtgacttcactactgaaaatgtttcagcaatttgtatcaataatgtaacactaaaggccttctttgaacatggaaagatagacttatataaca |
35910101 |
T |
|
| Q |
198 |
tctatgctccactatgtcatgactcttctctcaaaaatggctcaactggttatgtaactaatgattttgacccttgttctgattactatggtgctgccta |
297 |
Q |
| |
|
||||||||||| | ||||||||||| ||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||| |
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|
| T |
35910100 |
tctatgctccattgtgtcatgactcctctctgaaaaatggttcaactggttatgtaagtaatgattttgacccttgttctgattattatggttctgccta |
35910001 |
T |
|
| Q |
298 |
tctaaatacaccacaggttc |
317 |
Q |
| |
|
|||||||| |||| |||||| |
|
|
| T |
35910000 |
tctaaatagaccagaggttc |
35909981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 35934514 - 35934198
Alignment:
| Q |
1 |
agggaatgcttggattgatgatgccacaggtttaaaggggttatttgattacctttggactcatgcgttgaactcggatcaaactcatgagttgattgag |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||||||||| | ||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
35934514 |
agggaatgcttggattgatgatgctacaggtgacaaggggttatttgattacttctggactcatgctttgaactcagatcaaactcatgagttgattgag |
35934415 |
T |
|
| Q |
101 |
aagtattgcgacttcacttctgaaaacgtttcatcaatttgtatcaatgcaacacataaggccttccttgagcaaggaaagatagactcctataacatct |
200 |
Q |
| |
|
||||| || ||||||||| |||| |||| ||||||||||||||| |||| || ||||||| ||||| ||||||||||||||| ||||||||||| |
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|
| T |
35934414 |
aagtactgtgacttcactaaacaaaattattcaacaatttgtatcaatgtaacagattgggccttcattgagaaaggaaagatagacttctataacatct |
35934315 |
T |
|
| Q |
201 |
atgctccactatgtcatgactcttctctcaaaaatggctcaactggttatgtaactaatgattttgacccttgttctgattactatggtgctgcctatct |
300 |
Q |
| |
|
|||| ||| | ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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|
| T |
35934314 |
atgcgccattgtgtcatgactcttctctgaaaaatggttcaactggttatgtaactaatgattttgacccttgttctgataactatggtattgcctatct |
35934215 |
T |
|
| Q |
301 |
aaatacaccacaggttc |
317 |
Q |
| |
|
||||| |||| |||||| |
|
|
| T |
35934214 |
aaatagaccagaggttc |
35934198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 35940080 - 35939766
Alignment:
| Q |
1 |
agggaatgcttggattgatgatgccacaggtttaaaggggttatttgattacctttggactcatgcgttgaactcggatcaaactcatgagttgattgag |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||||| |||| || | ||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
35940080 |
agggaatgcttggattgatgatgctacaagtttaaaggggttatatgataacttgtggactcatgctttgaactcggatcaaactcatgagttgattgag |
35939981 |
T |
|
| Q |
101 |
aagtattgcgacttcacttctgaaaacgtttcatcaatttgtatcaatgcaacacataaggccttccttgagcaaggaaagatagactcctataacatct |
200 |
Q |
| |
|
||||| || ||||||||| |||| |||| ||||||||| |||||||| ||| | || | ||||| |||||||||||||||||| |||||||| |
|
|
| T |
35939980 |
aagtactgtgacttcactaaacaaaattattcagcaatttgtaccaatgcaatgaatatgtccatgattgagaaaggaaagatagactcctttaacatct |
35939881 |
T |
|
| Q |
201 |
atgctccactatgtcatgactcttctctcaaaaatggctcaactggttatgtaactaatgattttgacccttgttctgattactatggtgctgcctatct |
300 |
Q |
| |
|
|||||||| ||||||| |||||| |||| |||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
35939880 |
atgctccattatgtcacgactctactctgaaaaatggttcaactggttatgtaagtaatgatcttgacccttgttctgattactatggcactgcctatct |
35939781 |
T |
|
| Q |
301 |
aaatacaccacaggt |
315 |
Q |
| |
|
||||| |||| |||| |
|
|
| T |
35939780 |
aaatagaccagaggt |
35939766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 35921107 - 35920795
Alignment:
| Q |
1 |
agggaatgcttggattgatgatgccacaggtttaaaggggttatttgattacctttggactcatgcgttgaactcggatcaaactcatgagttgattgag |
100 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||| ||| |||| || | ||||||||||| || ||||| |||||||||||||||||||||||| |
|
|
| T |
35921107 |
agggaatgcttggattgatgatgcgacgaatttaaaggggatatatgataacttgtggactcatgctttaaactcagatcaaactcatgagttgattgag |
35921008 |
T |
|
| Q |
101 |
aagtattgcgacttcacttctgaaaacgtttcatcaatttgtatcaatgcaacacataaggccttccttgagcaaggaaagatagactcctataacatct |
200 |
Q |
| |
|
||||| || ||||||||| ||||| |||||| ||||||||| ||||||||| ||||||||||| ||||| ||||||||||||| |||||||||| |
|
|
| T |
35921007 |
aagtactgtgacttcactaaagaaaatgtttcagcaatttgtaacaatgcaactgataaggccttcgttgagacaggaaagatagacatctataacatcc |
35920908 |
T |
|
| Q |
201 |
atgctccactatgtcatgactcttctctcaaaaatggctc---aactggttatgtaactaatgattttgacccttgttctgattactatggtgctgccta |
297 |
Q |
| |
|
|||| ||| | ||||||||||||||||| |||||||| || |||||||| |||| ||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
35920907 |
atgcgccattgtgtcatgactcttctctgaaaaatggttctagtactggttacgtaagcaatgattttgacccttgttctgattactatgttactgccta |
35920808 |
T |
|
| Q |
298 |
tctaaatacacca |
310 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
35920807 |
tctaaatagacca |
35920795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 35927700 - 35927372
Alignment:
| Q |
1 |
agggaatgcttggattgatgatgccacaggtttaaaggggttatttgattacctttggactcatgcgttgaactcggatcaaactcatgagttgattgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||| ||||| || |||||||||||||||||||||||| |
|
|
| T |
35927700 |
agggaatgcttggattgatgatgccacaagtttgaaggggttatttgattacttttggactcatgctttgaattcagatcaaactcatgagttgattgag |
35927601 |
T |
|
| Q |
101 |
aagtattgcgacttcacttctga------------aaacgtttcatcaatttgtatcaatgcaacacataaggccttccttgagcaaggaaagatagact |
188 |
Q |
| |
|
||||| || ||||||||| ||| ||| |||| |||| || | ||||| |||| ||| ||| | | |||| ||||||||||||| | |
|
|
| T |
35927600 |
aagtactgtgacttcactgttgacttcactagtggaaatacttcagcaatatgcaacaatgtaacagatagggcttacactgagaaaggaaagatagatt |
35927501 |
T |
|
| Q |
189 |
cctataacatctatgctccactatgtcatgactcttctctcaaaaatggctcaactggttatgtaactaatgattttgacccttgttctgattactatgg |
288 |
Q |
| |
|
|||||||||||| |||||| | ||||| ||||||||| | |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
35927500 |
tctataacatctacgctccattgtgtcacgactcttctttgaaaaatggttcaactggttatgtaagtaatgattttgacccttgttctgattactatgg |
35927401 |
T |
|
| Q |
289 |
tgctgcctatctaaatacaccacaggttc |
317 |
Q |
| |
|
||||||| |||||| |||| |||||| |
|
|
| T |
35927400 |
cattgcctatttaaatagaccagaggttc |
35927372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 88 - 249
Target Start/End: Original strand, 21285096 - 21285260
Alignment:
| Q |
88 |
tgagttgattgagaagtattgcgacttcacttctgaaaacgtttcatcaatttgtatcaat---gcaacacataaggccttccttgagcaaggaaagata |
184 |
Q |
| |
|
|||||||||||||||||| || | ||||||| ||||||| |||||| |||||||||||||| | ||||| |||||||| |||| || ||||||||| |
|
|
| T |
21285096 |
tgagttgattgagaagtactgtggcttcactactgaaaatgtttcagcaatttgtatcaataatgtaacactaaaggccttgtttgaacatggaaagata |
21285195 |
T |
|
| Q |
185 |
gactcctataacatctatgctccactatgtcatgactcttctctcaaaaatggctcaactggtta |
249 |
Q |
| |
|
|||| |||||||||||||||||| | ||||||||||| ||||| |||||||| ||||||||||| |
|
|
| T |
21285196 |
gacttatataacatctatgctccattgtgtcatgactcctctctgaaaaatggttcaactggtta |
21285260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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