View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1486_low_2 (Length: 520)
Name: NF1486_low_2
Description: NF1486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1486_low_2 |
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| [»] scaffold0147 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 9 - 500
Target Start/End: Original strand, 25197223 - 25197697
Alignment:
| Q |
9 |
gataatactgcaattacatcaacatggtgcttagtattgttggctaaataccaagattggcaagaccgtgctcgtgcagaggtacttgaagtttgtcgag |
108 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25197223 |
gatactactgcaattacatcaacatggtgcttaatattgttggctaaataccaagattggcaagaccgtgctcgtgcagaggtacttgaagtttgtcgag |
25197322 |
T |
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| Q |
109 |
acggtaatctagatgcaagtaaccttagaaaaatgaaaacggtatgttttacaccaaaatttcatgtttccataaaatatatttcatcccttgcacttca |
208 |
Q |
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| T |
25197323 |
acggtaatctagatgcaagtaaccttagaaaaatgaaaacggtatgttttacaccaaaattacatgtttccataaa-tatatttcatcccttgcacttca |
25197421 |
T |
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| Q |
209 |
tattaatcatgtcacaattttggtcacaattatcaatccaattgtactacatcttttcaaagcttcattaacattcttatgcatgcatccagtaaataac |
308 |
Q |
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| T |
25197422 |
tattaatcatgtcacaatt------------atcaatacaattgtactacatcttttcatagcttcattaacattcttatgc----atccagtaaataac |
25197505 |
T |
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| Q |
309 |
tatcaaaattttgttttattttgcagttaacaatggtgattcaagagactttaaggctttattcacctgtattgtttgccgcaagaacaacattaaaaga |
408 |
Q |
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| T |
25197506 |
tatcaaaattttgttttattttgcagttaacaatggtgattcaagagactttaaggctttattcacctgtattgtttgccgcaagaacaacattaaaaga |
25197605 |
T |
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| Q |
409 |
ttatgatttaaaaggtatcaaaattccaaaaggaatcactattcagattccaatcccgatatttcaggaagacaaggatatatggggggtcg |
500 |
Q |
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| T |
25197606 |
ttatgatttaaaaggtatcaaaattccaaaaggaatcactattcagattccaatcccgatatttcaggaagacaaggatatatggggggtcg |
25197697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 330 - 375
Target Start/End: Original strand, 1763063 - 1763108
Alignment:
| Q |
330 |
tgcagttaacaatggtgattcaagagactttaaggctttattcacc |
375 |
Q |
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| T |
1763063 |
tgcagttaacaatggtgattcaagagacattgaggctttatccacc |
1763108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 7e-41; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 9 - 166
Target Start/End: Original strand, 19207621 - 19207778
Alignment:
| Q |
9 |
gataatactgcaattacatcaacatggtgcttagtattgttggctaaataccaagattggcaagaccgtgctcgtgcagaggtacttgaagtttgtcgag |
108 |
Q |
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| T |
19207621 |
gatactactgcaattacatcatcttggtgcttaatgttgttagctaaataccaagattggcaagatcgtgctcgtgcagaggtgcttgaagtatgcggaa |
19207720 |
T |
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| Q |
109 |
acggtaatctagatgcaagtaaccttagaaaaatgaaaacggtatgttttacaccaaa |
166 |
Q |
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| T |
19207721 |
atggtaatccagatgcaagtatacttagaaccatgaaaacggtatgttttacaccaaa |
19207778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 328 - 496
Target Start/End: Original strand, 19208058 - 19208226
Alignment:
| Q |
328 |
tttgcagttaacaatggtgattcaagagactttaaggctttattcacctgtattgtttgccgcaagaacaacattaaaagattatgatttaaaaggtatc |
427 |
Q |
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| T |
19208058 |
tttgcagttaaccatggtgattcaagagactttgaggctttatccaccagcagtatttatcaccagaacatcattccaagatattaatttaaaaggtatc |
19208157 |
T |
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| Q |
428 |
aaaattccaaaaggaatcactattcagattccaatcccgatatttcaggaagacaaggatatatggggg |
496 |
Q |
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| T |
19208158 |
aaagttccaaaaggaattaatatgcagattccaattgcgatattgcaacaagacattgatatctggggg |
19208226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147 (Bit Score: 64; Significance: 9e-28; HSPs: 2)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 31 - 166
Target Start/End: Original strand, 9949 - 10084
Alignment:
| Q |
31 |
catggtgcttagtattgttggctaaataccaagattggcaagaccgtgctcgtgcagaggtacttgaagtttgtcgagacggtaatctagatgcaagtaa |
130 |
Q |
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| T |
9949 |
catggtgcttaatgttgttagctacataccaagattggcaagatcgtgttcgtgcggaggtgcttgaagtttgtggaaatgataatctagatgcaaatat |
10048 |
T |
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| Q |
131 |
ccttagaaaaatgaaaacggtatgttttacaccaaa |
166 |
Q |
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| T |
10049 |
acttagaagcatgaaaacggtacgttttacaccaaa |
10084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 328 - 497
Target Start/End: Original strand, 10318 - 10487
Alignment:
| Q |
328 |
tttgcagttaacaatggtgattcaagagactttaaggctttattcacctgtattgtttgccgcaagaacaacattaaaagattatgatttaaaaggtatc |
427 |
Q |
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| T |
10318 |
tttgcagttaaccatggtgattcaagagactttgaggctttatccgccagcagtatttctcaccagaacagctttccaagatattaacataaaaggtatc |
10417 |
T |
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| Q |
428 |
aaaattccaaaaggaatcactattcagattccaatcccgatatttcaggaagacaaggatatatgggggg |
497 |
Q |
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| T |
10418 |
aaagttccaaaaggaatgaatattcagattccaatcccaatattgcagcatgacattgatatttgggggg |
10487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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