View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1486_low_22 (Length: 307)
Name: NF1486_low_22
Description: NF1486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1486_low_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 16 - 297
Target Start/End: Original strand, 41604569 - 41604850
Alignment:
| Q |
16 |
gttcaaaaccactccttagttgtatcaaatttgaaatctccatttctgtccatctatgaatattatccacactttcaaaagggtattcatgatttgttgt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
41604569 |
gttcaaaaccactccttagttgtatcaaatttgaaatctccatttctgtccatctatgaatattatccacactttcaaaagggtattcataatttgttgt |
41604668 |
T |
|
| Q |
116 |
atcatttgcttcttggctcttactcttatttggtgcttcaagttgtatcccaatatgttttcttacaacttctaacaatgcagaatctcttgcttcaacc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41604669 |
atcatttgcttcttggctcttactcttatttggtgcttcaagttgtatcccaatatgttttcttacaacttctaacaatgcagaatctcttgcttcaacc |
41604768 |
T |
|
| Q |
216 |
catgctttttctttagcccaaagttcatgtatttcttgatcaaacctcattgactcttttctcttcctttcttcttcctttg |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41604769 |
catgctttttctttagcccaaagttcatgtatttcttgatcaaacctcattgactcttttctcttcctttcttcttcctttg |
41604850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University