View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1486_low_23 (Length: 294)
Name: NF1486_low_23
Description: NF1486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1486_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 2 - 287
Target Start/End: Original strand, 41604877 - 41605162
Alignment:
| Q |
2 |
acaacactcaacattctctccatccaagcatcttgagtctcaataatatttttcatgtgagaatctacaatctcctcaactttacctctccaacttttcc |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41604877 |
acaacactcaacattctctccatccaagcatcttgagtctcaataatatttttcatgtgagaatctacaatctcctcaactttacctctccaacttttcc |
41604976 |
T |
|
| Q |
102 |
ttgccctcctatgaccactttgccctttctccttcgacgatttcatagtgtgtgcaatagttgagagatcctcatcgttattttcagatgaggatgtctc |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41604977 |
ttgccctcctatgaccactttgccctttctccttcgacgatttcatagtgtgtgcaatagttgagagatcctcatcgttattttcagatgaggatgtctc |
41605076 |
T |
|
| Q |
202 |
aaattcagacgagttcgagaaacttaggctttgtgagtacttgtggttatggatcaaattgtgatcaacaccattagtatattctt |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41605077 |
aaattcagacgagttcgagaaacttaggctttgtgagtacttgtggttatggatcaaattgtgatcaacaccattagtattttctt |
41605162 |
T |
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