View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1486_low_28 (Length: 271)
Name: NF1486_low_28
Description: NF1486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1486_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 262
Target Start/End: Original strand, 40113594 - 40113838
Alignment:
| Q |
18 |
tagtaaagccatgagatgtgataaaggcttttagagcatcatgccatgcacgaggtgcttgccgaagaccatagatagctttatgaagcttgcaaacatg |
117 |
Q |
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| T |
40113594 |
tagtaaagccatgagatgtgataaaggcttttagagcatcatgccatgcacgaggtgcttgccgaagaccatagatagctttatgaagcttgcaaacatg |
40113693 |
T |
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| Q |
118 |
attcagatactgtttatcttttagtcccggaggttgactcatgtaaacatcttctttgagtaatccttgaaggaacgcattgttaacatcaagttggtgc |
217 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40113694 |
attcggatactgtttatcttttagtcctggaggttgactcatgtaaacatcttctttgagtaatccttgaaggaacgcattgttaacatcaagttggtgc |
40113793 |
T |
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| Q |
218 |
agacgccaccctttccccaatgctatggtgagaactagttatatt |
262 |
Q |
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| T |
40113794 |
agacgccaccctttccccaatgctatggtgagaactagttttatt |
40113838 |
T |
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Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 6406639 - 6406555
Alignment:
| Q |
18 |
tagtaaagccatgagatgtgataaaggcttttagagcatcatgccatgcacgaggtgcttgccgaagaccatagatagctttatg |
102 |
Q |
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| T |
6406639 |
tagtaaagccatgagatgtgataaaggcttttagagcatcatgccatgcacgaggtgcttgccgaagaccatagatagctttatg |
6406555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 189
Target Start/End: Original strand, 654734 - 654891
Alignment:
| Q |
32 |
gatgtgataaaggcttttagagcatcatgccatgcacgaggtgcttgccgaagaccatagatagctttatgaagcttgcaaacatgattcagatactgtt |
131 |
Q |
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| T |
654734 |
gatgtgatgaaagctttgagaccatcatgccatgcacgaggtgcttatctaagaccataaattgatttgtgaagtttgcacacatgatttggatattgtt |
654833 |
T |
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| Q |
132 |
tatcttttagtcccggaggttgactcatgtaaacatcttctttgagtaatccttgaag |
189 |
Q |
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| T |
654834 |
tatctctgagtcctggaggctgagtcatgtaaacttcttccttgagtgatgcttgaag |
654891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 45190095 - 45190030
Alignment:
| Q |
150 |
gttgactcatgtaaacatcttctttgagtaatccttgaaggaacgcattgttaacatcaagttggt |
215 |
Q |
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| T |
45190095 |
gttgactcatgtaaacttgttctgtgagagatccttgaaggaaagcattgttaacatcaagttggt |
45190030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 9036701 - 9036737
Alignment:
| Q |
182 |
ccttgaaggaacgcattgttaacatcaagttggtgca |
218 |
Q |
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| T |
9036701 |
ccttgaaggaaggcattgttaacatcaagttgatgca |
9036737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 3019050 - 3018952
Alignment:
| Q |
18 |
tagtaaagccatgagatgtgataaaggcttttagagcatcatgccatgcacgaggtgcttgccgaagaccatagatagctttatgaagcttgcaaacat |
116 |
Q |
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| T |
3019050 |
tagtgaagccatgagaggtaatgaaggttttgagtgcatcatgccaagctctaggtgcttgccttaggccatatatagctttgtgtagtttgcaaacat |
3018952 |
T |
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