View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1486_low_30 (Length: 250)

Name: NF1486_low_30
Description: NF1486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1486_low_30
NF1486_low_30
[»] chr7 (9 HSPs)
chr7 (1-139)||(15003117-15003255)
chr7 (1-139)||(10259916-10260054)
chr7 (1-119)||(30925696-30925814)
chr7 (138-197)||(16422681-16422740)
chr7 (1-119)||(9739410-9739528)
chr7 (140-197)||(12502069-12502126)
chr7 (1-61)||(9732535-9732595)
chr7 (210-244)||(21266982-21267016)
chr7 (140-197)||(12527703-12527760)
[»] chr3 (6 HSPs)
chr3 (1-119)||(8147325-8147443)
chr3 (1-140)||(20975776-20975916)
chr3 (1-118)||(20961848-20961966)
chr3 (48-119)||(15962521-15962592)
chr3 (140-197)||(1312486-1312543)
chr3 (140-197)||(19933773-19933830)
[»] chr5 (2 HSPs)
chr5 (2-139)||(17099419-17099556)
chr5 (1-61)||(15117098-15117157)
[»] chr2 (1 HSPs)
chr2 (1-119)||(30947581-30947699)
[»] chr4 (2 HSPs)
chr4 (1-139)||(13269081-13269218)
chr4 (1-79)||(24608987-24609064)
[»] chr6 (8 HSPs)
chr6 (1-119)||(32668903-32669020)
chr6 (5-118)||(28043853-28043966)
chr6 (5-139)||(28044726-28044859)
chr6 (1-119)||(26895850-26895967)
chr6 (1-119)||(13730179-13730295)
chr6 (8-140)||(10230494-10230626)
chr6 (17-61)||(13553654-13553698)
chr6 (150-197)||(3510805-3510852)
[»] chr1 (6 HSPs)
chr1 (1-139)||(951421-951559)
chr1 (1-116)||(50057777-50057892)
chr1 (151-197)||(25218445-25218491)
chr1 (152-197)||(18154264-18154309)
chr1 (140-197)||(18902987-18903044)
chr1 (1-48)||(18838289-18838337)
[»] scaffold0072 (1 HSPs)
scaffold0072 (1-118)||(18804-18921)
[»] scaffold0062 (1 HSPs)
scaffold0062 (1-139)||(1872-2005)
[»] scaffold0003 (1 HSPs)
scaffold0003 (138-197)||(11393-11452)
[»] scaffold0495 (1 HSPs)
scaffold0495 (8-140)||(7215-7347)
[»] chr8 (4 HSPs)
chr8 (140-197)||(6820547-6820604)
chr8 (140-197)||(3896258-3896315)
chr8 (140-197)||(5536073-5536130)
chr8 (140-197)||(44669930-44669987)
[»] scaffold0205 (1 HSPs)
scaffold0205 (69-139)||(10225-10295)


Alignment Details
Target: chr7 (Bit Score: 95; Significance: 1e-46; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 15003117 - 15003255
Alignment:
Q  1 ttttagtctgtctttattatttgtgagccactcttatatcactttgatattagagttggacattgttattgagttgtaaaactctgaatctctcaaagct 100  Q
    |||||||||||| || ||||||||||| || ||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  15003117 ttttagtctgtcattgttatttgtgagtcattctcatatcactttgatattagagttggactttgttattgagtagtaaaactctgaatctctcaaagct 15003216  T
Q  101 tgtaaggacgagttgattcactctctaggagagtgtctc 139  Q
    | |||| ||||||||||||| | ||||||||||||||||    
T  15003217 tttaagcacgagttgattcattttctaggagagtgtctc 15003255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 10259916 - 10260054
Alignment:
Q  1 ttttagtctgtctttattatttgtgagccactcttatatcactttgatattagagttggacattgttattgagttgtaaaactctgaatctctcaaagct 100  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||  |||| ||||||||||||||||||||||||||| |||||    
T  10259916 ttttagtctgcctttgttatttgtgagccactcttatatcactttgatattatagttggaatttgtaattgagttgtaaaactctgaatctctctaagct 10260015  T
Q  101 tgtaaggacgagttgattcactctctaggagagtgtctc 139  Q
    |||||| ||||| ||||||  | || |||||||||||||    
T  10260016 tgtaagcacgaggtgattctttgtcaaggagagtgtctc 10260054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 30925696 - 30925814
Alignment:
Q  1 ttttagtctgtctttattatttgtgagccactcttatatcactttgatattagagttggacattgttattgagttgtaaaactctgaatctctcaaagct 100  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||| ||||| ||| |||| ||||||||||||| || |||||||||| |||||    
T  30925696 ttttagtctgtcgttgttatttgtgagccactcttatatcactttgatatttgagttcgactttgtaattgagttgtaaagctttgaatctctctaagct 30925795  T
Q  101 tgtaaggacgagttgattc 119  Q
    | |||| ||||||||||||    
T  30925796 tttaagcacgagttgattc 30925814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 16422740 - 16422681
Alignment:
Q  138 tctgtaacgactcgatttttcagacgttaattagcaaaattctaagcgaaaagacgaata 197  Q
    ||||||||||| ||||||||||||||||||||| ||||||||| || |||||||||||||    
T  16422740 tctgtaacgacccgatttttcagacgttaattaccaaaattcttagtgaaaagacgaata 16422681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 9739410 - 9739528
Alignment:
Q  1 ttttagtctgtctttattatttgtgagccactcttatatcactttgatattagagttggacattgttattgagttgtaaaactctgaatctctca-aagc 99  Q
    |||||||||||| || ||||||||||||||| ||  |||| |||||||||||||| |||||  | |  ||||||||| ||||| ||| || |||| ||||    
T  9739410 ttttagtctgtccttgttatttgtgagccacactcgtatctctttgatattagagctggactatttatttgagttgt-aaactttgattcgctcataagc 9739508  T
Q  100 ttgtaaggacgagttgattc 119  Q
    ||||||| |||||| |||||    
T  9739509 ttgtaagcacgagtggattc 9739528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 197
Target Start/End: Original strand, 12502069 - 12502126
Alignment:
Q  140 tgtaacgactcgatttttcagacgttaattagcaaaattctaagcgaaaagacgaata 197  Q
    ||||||||| ||||||||| ||| ||||||| ||||||||| || |||||||||||||    
T  12502069 tgtaacgacccgatttttcggacattaattatcaaaattcttagtgaaaagacgaata 12502126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 9732535 - 9732595
Alignment:
Q  1 ttttagtctgtctttattatttgtgagccactcttatatcactttgatattagagttggac 61  Q
    ||||||| |||| || ||||||||||||||||||  |||| | ||||||||||||||||||    
T  9732535 ttttagtttgtccttgttatttgtgagccactctcgtatctcattgatattagagttggac 9732595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 244
Target Start/End: Original strand, 21266982 - 21267016
Alignment:
Q  210 aaaataataacaataacttaaaactcctttgcttc 244  Q
    ||||||||||||||||||||||||||||| |||||    
T  21266982 aaaataataacaataacttaaaactccttggcttc 21267016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 197
Target Start/End: Original strand, 12527703 - 12527760
Alignment:
Q  140 tgtaacgactcgatttttcagacgttaattagcaaaattctaagcgaaaagacgaata 197  Q
    |||||||||  |||||||| ||| ||||||| ||||||||| || |||||||||||||    
T  12527703 tgtaacgacctgatttttcggacattaattatcaaaattcttagtgaaaagacgaata 12527760  T

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Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 8147325 - 8147443
Alignment:
Q  1 ttttagtctgtctttattatttgtgagccactcttatatcactttgatattagagttggacattgttattgagttgtaaaactctgaatctctcaaagct 100  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||| |||||    
T  8147325 ttttagtttgtctttattatttgtgagctactcttatatcactttgatattagagttggactttgtaatcgagttgtaaaactctgaatctctctaagct 8147424  T
Q  101 tgtaaggacgagttgattc 119  Q
    |||||| ||||||||||||    
T  8147425 tgtaagaacgagttgattc 8147443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 20975776 - 20975916
Alignment:
Q  1 ttttagtctgtctttattatttgtgagccactcttatatcactttgatattagagttggac-attgttattgagttgtaaaactctgaatctctcaaagc 99  Q
    ||||||| |||| || |||||||||||||||||||||||| ||||||||||||||||||||  |||| |||||||||||| ||||| ||||| || ||||    
T  20975776 ttttagtttgtcgttgttatttgtgagccactcttatatctctttgatattagagttggacttttgtaattgagttgtaatactctaaatctatctaagc 20975875  T
Q  100 ttgtaaggacgagttgattcactctctaggagagtgtctct 140  Q
    || |||| || |||||||||  | |||||||||||||||||    
T  20975876 ttttaagcacaagttgattctttttctaggagagtgtctct 20975916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 20961848 - 20961966
Alignment:
Q  1 ttttagtctgtctttattatttgtgagccactcttatatcactttgatattagagttggac-attgttattgagttgtaaaactctgaatctctcaaagc 99  Q
    |||||||||||| || ||||||||||| |||||||||||| ||||||| ||||||||||||  |||| |||||||||||| |||||||||||||  ||||    
T  20961848 ttttagtctgtcgttgttatttgtgagacactcttatatctctttgattttagagttggacttttgtaattgagttgtaatactctgaatctctttaagc 20961947  T
Q  100 ttgtaaggacgagttgatt 118  Q
    || |||| | |||||||||    
T  20961948 ttttaagcatgagttgatt 20961966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 119
Target Start/End: Complemental strand, 15962592 - 15962521
Alignment:
Q  48 tattagagttggacattgttattgagttgtaaaactctgaatctctcaaagcttgtaaggacgagttgattc 119  Q
    |||||||||||||| ||||  |||||||||||||||||||||||||| ||||||||||| || |||||||||    
T  15962592 tattagagttggactttgtagttgagttgtaaaactctgaatctctcgaagcttgtaagcacaagttgattc 15962521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 197
Target Start/End: Complemental strand, 1312543 - 1312486
Alignment:
Q  140 tgtaacgactcgatttttcagacgttaattagcaaaattctaagcgaaaagacgaata 197  Q
    ||||||||| ||||||||| ||||||||||| ||||||||| || |||||| ||||||    
T  1312543 tgtaacgacccgatttttcggacgttaattaccaaaattcttagtgaaaagtcgaata 1312486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 197
Target Start/End: Complemental strand, 19933830 - 19933773
Alignment:
Q  140 tgtaacgactcgatttttcagacgttaattagcaaaattctaagcgaaaagacgaata 197  Q
    |||||| || ||||||||| ||||||||||| ||||||||| || |||||||||||||    
T  19933830 tgtaacaacccgatttttcggacgttaattaccaaaattcttagtgaaaagacgaata 19933773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 2 - 139
Target Start/End: Original strand, 17099419 - 17099556
Alignment:
Q  2 tttagtctgtctttattatttgtgagccactcttatatcactttgatattagagttggacattgttattgagttgtaaaactctgaatctctcaaagctt 101  Q
    |||||||| || || |||||||||||| |||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  17099419 tttagtctatcgttgttatttgtgagcaactcttatgtcaccttgatattagagttggactttgttattgagttgtaaaactctgaatctgtcaaagctt 17099518  T
Q  102 gtaaggacgagttgattcactctctaggagagtgtctc 139  Q
     |||| ||||||||||||| | ||||||||||||||||    
T  17099519 ttaagcacgagttgattcattgtctaggagagtgtctc 17099556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 15117157 - 15117098
Alignment:
Q  1 ttttagtctgtctttattatttgtgagccactcttatatcactttgatattagagttggac 61  Q
    |||||||||||| ||||| ||||| |||||||||| |||| | |||||||||||| |||||    
T  15117157 ttttagtctgtccttatt-tttgtcagccactcttgtatccccttgatattagagctggac 15117098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 30947699 - 30947581
Alignment:
Q  1 ttttagtctgtctttattatttgtgagccactcttatatcactttgatattagagttggacattgttattgagttgtaaaactctgaatctctcaaagct 100  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||| || |||||||||||||||||||||||| |||||    
T  30947699 ttttagtatgtctttgttatttgtgagccactcttatatcactttgatatcagagttggactttgtaatcgagttgtaaaactctgaatctctctaagct 30947600  T
Q  101 tgtaaggacgagttgattc 119  Q
    |||||| ||||||||||||    
T  30947599 tgtaagcacgagttgattc 30947581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 13269218 - 13269081
Alignment:
Q  1 ttttagtctgtctttattatttgtgagccactcttatatcactttgatattagagttggacattgttattgagttgtaaaactctgaatctctcaaagct 100  Q
    |||||||||||| || |||||||| |||||||||||||||||||||||||| ||||| ||| |||| |||||||||||| |||||||||||||| |||||    
T  13269218 ttttagtctgtcattgttatttgtaagccactcttatatcactttgatatttgagttcgactttgtaattgagttgtaatactctgaatctctctaagct 13269119  T
Q  101 tgtaaggacgagttgattcactctctaggagagtgtctc 139  Q
    | |||| ||||| ||||||  | ||||||||||||||||    
T  13269118 tttaagcacgag-tgattctttttctaggagagtgtctc 13269081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 24609064 - 24608987
Alignment:
Q  1 ttttagtctgtctttattatttgtgagccactcttatatcactttgatattagagttggacattgtta-ttgagttgtaa 79  Q
    ||||||||| || || ||||||||||||| ||||| | |||| |||||| |||||||||  ||||||| |||||||||||    
T  24609064 ttttagtctatccttgttatttgtgagcccctcttgtgtcacgttgatactagagttgg--attgttagttgagttgtaa 24608987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 32669020 - 32668903
Alignment:
Q  1 ttttagtctgtctttattatttgtgagccactcttatatcactttgatattagagttggacattgttattgagttgtaaaactctgaatctctcaaagct 100  Q
    ||||||||||||||  |||||||||||||||||| |||||||||||||||| ||||||||| ||||  ||||||||||||||||||||||||||||| |     
T  32669020 ttttagtctgtcttg-ttatttgtgagccactctcatatcactttgatatttgagttggactttgtagttgagttgtaaaactctgaatctctcaaatca 32668922  T
Q  101 tgtaaggacgagttgattc 119  Q
    |||||| |||||| |||||    
T  32668921 tgtaagcacgagtcgattc 32668903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 118
Target Start/End: Original strand, 28043853 - 28043966
Alignment:
Q  5 agtctgtctttattatttgtgagccactcttatatcactttgatattagagttggacattgttattgagttgtaaaactctgaatctctcaaagcttgta 104  Q
    ||||| ||||| ||||||||| |||||||| ||||| |||||||||||||||||||| |||| |||||||||||| |||||||||||||  |||||| ||    
T  28043853 agtctatctttgttatttgtgtgccactctcatatctctttgatattagagttggactttgtaattgagttgtaatactctgaatctctataagctttta 28043952  T
Q  105 aggacgagttgatt 118  Q
    || |||||||||||    
T  28043953 agcacgagttgatt 28043966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 139
Target Start/End: Original strand, 28044726 - 28044859
Alignment:
Q  5 agtctgtctttattatttgtgagccactcttatatcactttgatattagagttggacattgttattgagttgtaaaactctgaatctctcaaagcttgta 104  Q
    ||||||||||| ||||||||| | |||||| ||||  |||||||||||||||||||| |||| |||||||||||| ||| |||||| ||| |||||| ||    
T  28044726 agtctgtctttgttatttgtgtgacactctcatatttctttgatattagagttggactttgtaattgagttgtaatactttgaatc-ctctaagctttta 28044824  T
Q  105 aggacgagttgattcactctctaggagagtgtctc 139  Q
    || ||||||||||||  | ||||||||||||||||    
T  28044825 agcacgagttgattctttttctaggagagtgtctc 28044859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 26895967 - 26895850
Alignment:
Q  1 ttttagtctgtctttattatttgtgagccactcttatatcactttgatattagagttggacattgttattgagttgtaaaactctgaatctctcaaagct 100  Q
    ||||||| ||||||| ||||||||||||||||||  |||  ||| ||||||  ||||| || ||||  ||||||||||||||| |||||| |||||||||    
T  26895967 ttttagtttgtctttgttatttgtgagccactctcgtatttctt-gatattgaagttgaactttgtagttgagttgtaaaactttgaatcactcaaagct 26895869  T
Q  101 tgtaaggacgagttgattc 119  Q
    |||||| ||||||||||||    
T  26895868 tgtaagcacgagttgattc 26895850  T

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Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 13730179 - 13730295
Alignment:
Q  1 ttttagtctgtctttattatttgtgagccactcttatatcactttgatattagagttggacattgttattgagttgtaaaactctgaatctctcaaagct 100  Q
    ||||||||||||||| ||  ||||||||| |||| ||||| | |||||||||||||| ||| ||||   ||||||||||| |||| ||||||||||||||    
T  13730179 ttttagtctgtctttgtt--ttgtgagcccctctcatatctccttgatattagagtttgactttgtagctgagttgtaaatctctaaatctctcaaagct 13730276  T
Q  101 tgtaaggacgagttgattc 119  Q
    |||||| | ||||| ||||    
T  13730277 tgtaagcaagagttaattc 13730295  T

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Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 10230626 - 10230494
Alignment:
Q  8 ctgtctttattatttgtgagccactcttatatcactttgatattagagttggacattgttattgagttgtaaaactctgaatctctcaaagcttgtaagg 107  Q
    |||||||| | ||||||||||||| ||  |||| |||||||||| |||||| ||  | |  |||||||||||||||||||||| ||||||  ||||| |     
T  10230626 ctgtctttgtaatttgtgagccaccctcgtatcgctttgatatttgagttgaactatatagttgagttgtaaaactctgaatcactcaaaatttgtaggc 10230527  T
Q  108 acgagttgattcactctctaggagagtgtctct 140  Q
    ||||||||||||  | | ||| |||||||||||    
T  10230526 acgagttgattctttgtttagaagagtgtctct 10230494  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 13553698 - 13553654
Alignment:
Q  17 ttatttgtgagccactcttatatcactttgatattagagttggac 61  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||    
T  13553698 ttatttgtgagccactcttgtatcacgttgatattagagttggac 13553654  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 197
Target Start/End: Complemental strand, 3510852 - 3510805
Alignment:
Q  150 cgatttttcagacgttaattagcaaaattctaagcgaaaagacgaata 197  Q
    ||||||||||||||||||||| ||||||||| || ||||||| |||||    
T  3510852 cgatttttcagacgttaattaccaaaattcttagtgaaaagaggaata 3510805  T

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Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 951421 - 951559
Alignment:
Q  1 ttttagtctgtctttattatttgtgagccactcttatatcactttgatattagagttggacattgttattgagttgtaaaactctgaatctctcaaagct 100  Q
    ||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||| |||| |||||||||||| |||||| || |||| |||||    
T  951421 ttttagtctgtcttttttatttgtgagtcactctcatatcactttgatattagagttggactttgtaattgagttgtaatactctgtatatctctaagct 951520  T
Q  101 tgtaaggacgagttgattcactctctaggagagtgtctc 139  Q
    | |||| || ||  ||||||   ||||||||||||||||    
T  951521 tttaagcacaagaagattcatgttctaggagagtgtctc 951559  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 50057892 - 50057777
Alignment:
Q  1 ttttagtctgtctttattatttgtgagccactcttatatcactttgatattagagttggacattgttattgagttgtaaaactctgaatctctcaaagct 100  Q
    ||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||  ||||||| |||  ||||||||||||| |||||    
T  50057892 ttttagtatgtctttgttatttgtgagccactctcatatcactttgatattagagttggactttgtatttgagttttaatgctctgaatctctctaagct 50057793  T
Q  101 tgtaaggacgagttga 116  Q
    | |||| |||||||||    
T  50057792 tttaagcacgagttga 50057777  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 197
Target Start/End: Complemental strand, 25218491 - 25218445
Alignment:
Q  151 gatttttcagacgttaattagcaaaattctaagcgaaaagacgaata 197  Q
    ||||||||||||||||||||| |||||||  || |||||||||||||    
T  25218491 gatttttcagacgttaattagtaaaattcctagtgaaaagacgaata 25218445  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 18154309 - 18154264
Alignment:
Q  152 atttttcagacgttaattagcaaaattctaagcgaaaagacgaata 197  Q
    ||||||| ||||||||||| ||||||||| || |||||||||||||    
T  18154309 atttttccgacgttaattatcaaaattcttagtgaaaagacgaata 18154264  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 197
Target Start/End: Complemental strand, 18903044 - 18902987
Alignment:
Q  140 tgtaacgactcgatttttcagacgttaattagcaaaattctaagcgaaaagacgaata 197  Q
    ||||||||  ||||||||| ||||||||||| ||||||||| || ||||||| |||||    
T  18903044 tgtaacgatccgatttttcggacgttaattaccaaaattcttagtgaaaagatgaata 18902987  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 18838289 - 18838337
Alignment:
Q  1 ttttagtctgt-ctttattatttgtgagccactcttatatcactttgat 48  Q
    ||||||||||| |||| ||||||||||||||||||| |||||| |||||    
T  18838289 ttttagtctgttctttgttatttgtgagccactcttgtatcacgttgat 18838337  T

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Target: scaffold0072 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 18921 - 18804
Alignment:
Q  1 ttttagtctgtctttattatttgtgagccactcttatatcactttgatattagagttggacattgttattgagttgtaaaactctgaatctctcaaagct 100  Q
    ||||||| ||||||| ||||||||||||||   | |||||||||||||||||||||||||| |||| ||||||||||||  ||||||||||||| |||||    
T  18921 ttttagtttgtctttgttatttgtgagccatgatcatatcactttgatattagagttggactttgtaattgagttgtaatgctctgaatctctctaagct 18822  T
Q  101 tgtaaggacgagttgatt 118  Q
    | |||| |||||||||||    
T  18821 tttaagcacgagttgatt 18804  T

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Target: scaffold0062 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 1872 - 2005
Alignment:
Q  1 ttttagtctgtctttattatttgtgagccactcttatatcactttgatattagagttggacattgttattgagttgtaaaactctgaatctctcaaagct 100  Q
    ||||||||||||||| |||||||||||||||||| |||||||||| ||     |||||||| |||| ||||||||||||  ||||||||||||| |||||    
T  1872 ttttagtctgtctttgttatttgtgagccactctcatatcactttaat-----agttggactttgtaattgagttgtaatgctctgaatctctctaagct 1966  T
Q  101 tgtaaggacgagttgattcactctctaggagagtgtctc 139  Q
    | || | ||||||||||||  | ||||||||||||||||    
T  1967 tttaggcacgagttgattctttttctaggagagtgtctc 2005  T

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Target: scaffold0003 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 11452 - 11393
Alignment:
Q  138 tctgtaacgactcgatttttcagacgttaattagcaaaattctaagcgaaaagacgaata 197  Q
    ||||||||||| ||||||||||||||||||||| ||||||||| || |||||||||||||    
T  11452 tctgtaacgacccgatttttcagacgttaattaccaaaattcttagtgaaaagacgaata 11393  T

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Target: scaffold0495 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 7347 - 7215
Alignment:
Q  8 ctgtctttattatttgtgagccactcttatatcactttgatattagagttggacattgttattgagttgtaaaactctgaatctctcaaagcttgtaagg 107  Q
    |||||||| | ||||||||||||| ||  |||| |||||||||| |||||| ||  | |  |||||||||||||||||||||| ||||||  ||||| |     
T  7347 ctgtctttgtaatttgtgagccaccctcgtatcgctttgatatttgagttgaactatatagttgagttgtaaaactctgaatcactcaaaatttgtaggc 7248  T
Q  108 acgagttgattcactctctaggagagtgtctct 140  Q
    ||||||||||||  | | ||| |||||||||||    
T  7247 acgagttgattctttgtttagaagagtgtctct 7215  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 197
Target Start/End: Complemental strand, 6820604 - 6820547
Alignment:
Q  140 tgtaacgactcgatttttcagacgttaattagcaaaattctaagcgaaaagacgaata 197  Q
    |||||||||  |||||||| ||||||||||||||||||||| ||| ||||||||||||    
T  6820604 tgtaacgacctgatttttcggacgttaattagcaaaattcttagcaaaaagacgaata 6820547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 197
Target Start/End: Original strand, 3896258 - 3896315
Alignment:
Q  140 tgtaacgactcgatttttcagacgttaattagcaaaattctaagcgaaaagacgaata 197  Q
    ||||||||| ||||||||| ||| ||||||| ||||||||| || |||||||||||||    
T  3896258 tgtaacgacccgatttttcggacattaattaccaaaattcttagtgaaaagacgaata 3896315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 197
Target Start/End: Original strand, 5536073 - 5536130
Alignment:
Q  140 tgtaacgactcgatttttcagacgttaattagcaaaattctaagcgaaaagacgaata 197  Q
    ||||||||| ||||||||| ||||||||||| ||||||||| |  |||||||||||||    
T  5536073 tgtaacgacccgatttttcggacgttaattaccaaaattcttaatgaaaagacgaata 5536130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 197
Target Start/End: Complemental strand, 44669987 - 44669930
Alignment:
Q  140 tgtaacgactcgatttttcagacgttaattagcaaaattctaagcgaaaagacgaata 197  Q
    ||||||||  ||||||||| ||||||||| | ||||||||| || |||||||||||||    
T  44669987 tgtaacgatccgatttttcggacgttaataaccaaaattcttagtgaaaagacgaata 44669930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 139
Target Start/End: Complemental strand, 10295 - 10225
Alignment:
Q  69 ttgagttgtaaaactctgaatctctcaaagcttgtaaggacgagttgattcactctctaggagagtgtctc 139  Q
    |||| |||||||||||| |||| ||||||||||||||| | |||||||||   | ||||||||||||||||    
T  10295 ttgatttgtaaaactctaaatcactcaaagcttgtaagcaagagttgattttttttctaggagagtgtctc 10225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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