View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1486_low_33 (Length: 242)

Name: NF1486_low_33
Description: NF1486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1486_low_33
NF1486_low_33
[»] chr2 (5 HSPs)
chr2 (6-210)||(30947924-30948132)
chr2 (70-209)||(17364333-17364480)
chr2 (112-180)||(20376341-20376410)
chr2 (115-181)||(40584704-40584770)
chr2 (112-181)||(21690861-21690930)
[»] chr5 (4 HSPs)
chr5 (6-208)||(17098984-17099193)
chr5 (112-208)||(15117495-15117591)
chr5 (135-208)||(24880699-24880772)
chr5 (112-207)||(14053308-14053403)
[»] chr6 (6 HSPs)
chr6 (6-207)||(28044291-28044499)
chr6 (6-210)||(28043430-28043640)
chr6 (112-208)||(32669358-32669454)
chr6 (120-209)||(12464805-12464893)
chr6 (115-180)||(10374143-10374208)
chr6 (112-162)||(3355913-3355963)
[»] chr3 (3 HSPs)
chr3 (4-205)||(8146906-8147115)
chr3 (25-210)||(20975343-20975535)
chr3 (114-188)||(35510971-35511045)
[»] chr4 (5 HSPs)
chr4 (7-203)||(17870874-17871077)
chr4 (118-197)||(13959682-13959761)
chr4 (6-183)||(13269441-13269626)
chr4 (112-183)||(11864509-11864580)
chr4 (114-179)||(11426522-11426587)
[»] scaffold0072 (1 HSPs)
scaffold0072 (6-208)||(19145-19352)
[»] chr7 (6 HSPs)
chr7 (27-205)||(10259487-10259672)
chr7 (113-210)||(18070515-18070612)
chr7 (114-162)||(6628598-6628646)
chr7 (114-181)||(5299849-5299916)
chr7 (120-182)||(11917725-11917787)
chr7 (9-78)||(30925401-30925470)
[»] chr8 (3 HSPs)
chr8 (112-200)||(1444851-1444938)
chr8 (122-210)||(16207762-16207850)
chr8 (112-208)||(28847804-28847900)
[»] scaffold0259 (1 HSPs)
scaffold0259 (6-211)||(20083-20296)
[»] chr1 (6 HSPs)
chr1 (112-210)||(24549944-24550042)
chr1 (112-209)||(51111014-51111111)
chr1 (49-203)||(50058160-50058321)
chr1 (113-210)||(14911054-14911151)
chr1 (112-215)||(12301218-12301321)
chr1 (114-188)||(25124176-25124250)
[»] scaffold0062 (1 HSPs)
scaffold0062 (116-200)||(1458-1542)
[»] scaffold0533 (1 HSPs)
scaffold0533 (113-180)||(2468-2535)


Alignment Details
Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 6 - 210
Target Start/End: Original strand, 30947924 - 30948132
Alignment:
Q  6 cttctagaaacacgcttttttggtcaactctttacgcgaaacaaatctttagataatatatgaaaatcttcacgtttaaaacaaatctccaagtaagcgg 105  Q
    |||||||||||||||||| ||||||||||||| ||| |||||||||||| | | |||||||| ||||||||||||||||||  |||||||||||||||||    
T  30947924 cttctagaaacacgctttcttggtcaactcttcacgtgaaacaaatcttcaaagaatatatggaaatcttcacgtttaaaatgaatctccaagtaagcgg 30948023  T
Q  106 aacaaa-------atgatgtcgtaccaacatgttaagacatcatgtctgacatcttgctagaactaatgttttaataaaatgcagtcaatacatgtctaa 198  Q
    || ||        ||||||||||||||   ||||||||||||||||||||||||||||||| ||||||||||||| |||||| || ||||||||||||||    
T  30948024 aataaggcatactatgatgtcgtacca---tgttaagacatcatgtctgacatcttgctaggactaatgttttaacaaaatgaagccaatacatgtctaa 30948120  T
Q  199 aaacctaacaat 210  Q
    ||||||||||||    
T  30948121 aaacctaacaat 30948132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 70 - 209
Target Start/End: Original strand, 17364333 - 17364480
Alignment:
Q  70 aatcttcacgtttaaaacaaatctccaagtaagcggaacaaa-------atgatgtcgtaccaacatgtt-aagacatcatgtctgacatcttgctagaa 161  Q
    |||||||||||||||||  |||||||||||||||||| |||        ||||||| ||||||||||||| |||||||| ||||| ||||||| ||||||    
T  17364333 aatcttcacgtttaaaaagaatctccaagtaagcggatcaaggcacgctatgatgtagtaccaacatgtttaagacatcttgtctaacatcttcctagaa 17364432  T
Q  162 ctaatgttttaataaaatgcagtcaatacatgtctaaaaacctaacaa 209  Q
    ||| |||||||| |||||| || ||| ||||||||||||||| |||||    
T  17364433 ctattgttttaaaaaaatgtagccaacacatgtctaaaaacccaacaa 17364480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 180
Target Start/End: Complemental strand, 20376410 - 20376341
Alignment:
Q  112 atgatgtcgtaccaacatg-ttaagacatcatgtctgacatcttgctagaactaatgttttaataaaatg 180  Q
    ||||||||||||||||||| |||||||||| ||||| ||||||| ||||||| | |||||||| ||||||    
T  20376410 atgatgtcgtaccaacatgtttaagacatcttgtctaacatcttactagaacaattgttttaacaaaatg 20376341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 181
Target Start/End: Complemental strand, 40584770 - 40584704
Alignment:
Q  115 atgtcgtaccaacatgttaagacatcatgtctgacatcttgctagaactaatgttttaataaaatgc 181  Q
    |||||||||| |||||| |||||||| ||||  |||||||||||||||   |||||||| |||||||    
T  40584770 atgtcgtacctacatgtcaagacatcttgtccaacatcttgctagaacatttgttttaaaaaaatgc 40584704  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 181
Target Start/End: Complemental strand, 21690930 - 21690861
Alignment:
Q  112 atgatgtcgtaccaacatgttaagacatcatgtctgacatcttgctagaactaatgttttaataaaatgc 181  Q
    ||||||| |||||||||||| ||||||||  |||  |||||||||||||||   |||||||| |||||||    
T  21690930 atgatgttgtaccaacatgtcaagacatctagtccaacatcttgctagaacacttgttttaacaaaatgc 21690861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 6 - 208
Target Start/End: Complemental strand, 17099193 - 17098984
Alignment:
Q  6 cttctagaaacacgcttttttggtcaactctttacgcgaaacaaatctttagataatatatgaaaatcttcacgtttaaaacaaatctccaagtaagcgg 105  Q
    |||||||||||||  ||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||    
T  17099193 cttctagaaacacattttcttggtcaactctttacttgaaacaaatctttagataatatatgaaaatcttcaagtttaaaataaatccccaagtaagcgg 17099094  T
Q  106 aacaa-------aatgatgtcgtaccaacatgttaagacatcatgtctgacatcttgctagaactaatgttttaataaaatgcagtcaatacatgtctaa 198  Q
    |||||        |||||||||||||||||||||||||||| ||||||||| ||||  || |||||| ||||||| ||||||||| |||||||| ||||     
T  17099093 aacaaggtacactatgatgtcgtaccaacatgttaagacattatgtctgacgtcttattataactaaagttttaacaaaatgcagccaatacatatctat 17098994  T
Q  199 aaacctaaca 208  Q
    ||||||||||    
T  17098993 aaacctaaca 17098984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 112 - 208
Target Start/End: Original strand, 15117495 - 15117591
Alignment:
Q  112 atgatgtcgtaccaacatgttaagacatcatgtctgacatcttgctagaactaatgttttaataaaatgcagtcaatacatgtctaaaaacctaaca 208  Q
    |||||||| |||||| ||||||||||||| ||||||||||||||||||||||| |||||||| |||||| || ||| ||||||||| ||||| ||||    
T  15117495 atgatgtcataccaatatgttaagacatcttgtctgacatcttgctagaactattgttttaacaaaatgtagccaacacatgtctataaaccaaaca 15117591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 135 - 208
Target Start/End: Original strand, 24880699 - 24880772
Alignment:
Q  135 gacatcatgtctgacatcttgctagaactaatgttttaataaaatgcagtcaatacatgtctaaaaacctaaca 208  Q
    |||||| |||||||||| ||||||||||| ||||||||| ||||||||| ||| ||||| ||| ||||||||||    
T  24880699 gacatcttgtctgacatattgctagaactcatgttttaacaaaatgcagccaacacatggctacaaacctaaca 24880772  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 112 - 207
Target Start/End: Original strand, 14053308 - 14053403
Alignment:
Q  112 atgatgtcgtaccaacatgttaagacatcatgtctgacatcttgctagaactaatgttttaataaaatgcagtcaatacatgtctaaaaacctaac 207  Q
    |||||||||||||||||||| |||||||| | || || |||||||||||| |  ||||| || ||||||||| ||| ||| ||||| |||||||||    
T  14053308 atgatgtcgtaccaacatgtcaagacatcttatccgatatcttgctagaatttttgtttaaacaaaatgcagccaacacaagtctacaaacctaac 14053403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 103; Significance: 2e-51; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 6 - 207
Target Start/End: Complemental strand, 28044499 - 28044291
Alignment:
Q  6 cttctagaaacacgcttttttggtcaactctttacgcgaaacaaatctttagataatatatgaaaatcttcacgtttaaaacaaatctccaagtaagcgg 105  Q
    ||||||||| ||| |||| ||||||||||||| ||| |||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||| | | ||    
T  28044499 cttctagaagcaccctttcttggtcaactcttcacgtgaaacaaatctttagatattatatgaaaatcttcacatttaaaataaatctccaagaatgtgg 28044400  T
Q  106 aacaaaa-------tgatgtcgtaccaacatgttaagacatcatgtctgacatcttgctagaactaatgttttaataaaatgcagtcaatacatgtctaa 198  Q
    | ||| |       ||||||| ||||||||||||||||||| ||||||||||| || ||| |||||| ||||||| ||||||||||||||||||||||||    
T  28044399 atcaatacacgctatgatgtcataccaacatgttaagacattatgtctgacatttttctataactaaagttttaacaaaatgcagtcaatacatgtctaa 28044300  T
Q  199 aaacctaac 207  Q
    |||||||||    
T  28044299 aaacctaac 28044291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 6 - 210
Target Start/End: Complemental strand, 28043640 - 28043430
Alignment:
Q  6 cttctagaaacacgcttttttggtcaactctttacgcgaaacaaatctttagataatatatgaaaatcttcacgtttaaaacaaatctccaagtaagcgg 105  Q
    ||||||||| |||  ||| || |||||||||| ||| ||||||||||||||||||||||||||||| |||||| |||||||  |||||||||| | || |    
T  28043640 cttctagaagcactatttctttgtcaactcttcacgtgaaacaaatctttagataatatatgaaaa-cttcacatttaaaatcaatctccaagaatgctg 28043542  T
Q  106 aacaaaa-------tgatgtcgtaccaacatgttaagacatcatgtctgacatcttgctagaactaatgttttaataaaatgcagtcaatacatgtctaa 198  Q
    | ||| |       |||||||||||||||||||||||   | |||| | |||| |||||| |||||| ||||||| ||||||||||||||||||||||||    
T  28043541 atcaatacacgttatgatgtcgtaccaacatgttaaggtgttatgtttaacattttgctataactaaagttttaacaaaatgcagtcaatacatgtctaa 28043442  T
Q  199 aaacctaacaat 210  Q
    ||||| ||||||    
T  28043441 aaaccaaacaat 28043430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 208
Target Start/End: Original strand, 32669358 - 32669454
Alignment:
Q  112 atgatgtcgtaccaacatgttaagacatcatgtctgacatcttgctagaactaatgttttaataaaatgcagtcaatacatgtctaaaaacctaaca 208  Q
    ||||||||| ||||||||||||||| ||| ||||||||| ||||||||||||| |||||||| |||||  || ||| ||||||||| ||||||||||    
T  32669358 atgatgtcgcaccaacatgttaagatatcttgtctgacaccttgctagaactattgttttaacaaaatatagccaacacatgtctataaacctaaca 32669454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 120 - 209
Target Start/End: Original strand, 12464805 - 12464893
Alignment:
Q  120 gtaccaacatgttaagacatcatgtctgacatcttgctagaactaatgttttaataaaatgcagtcaatacatgtctaaaaacctaacaa 209  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||| || ||||| |||||| || ||| ||||||||| |||||||||||    
T  12464805 gtaccaacatgttaaaacatcttgtctgacatcttgctagaactattg-tttaacaaaatgtagccaacacatgtctacaaacctaacaa 12464893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 180
Target Start/End: Complemental strand, 10374208 - 10374143
Alignment:
Q  115 atgtcgtaccaacatgttaagacatcatgtctgacatcttgctagaactaatgttttaataaaatg 180  Q
    ||||||||||||||||||| |||||| ||||  |||||||||||||||   |||||||| ||||||    
T  10374208 atgtcgtaccaacatgttaggacatcttgtccaacatcttgctagaacacctgttttaacaaaatg 10374143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 162
Target Start/End: Complemental strand, 3355963 - 3355913
Alignment:
Q  112 atgatgtcgtaccaacatgttaagacatcatgtctgacatcttgctagaac 162  Q
    |||||||||||||||||||| |||||||| | ||||| |||||| ||||||    
T  3355963 atgatgtcgtaccaacatgtcaagacatcttatctgatatcttgatagaac 3355913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 4 - 205
Target Start/End: Complemental strand, 8147115 - 8146906
Alignment:
Q  4 tacttctagaaacacgcttttttggtcaactctttacgcgaaacaaatctttagataatatatgaaaatcttcacgtttaaaacaaatctccaagtaagc 103  Q
    |||||||||||||||| ||| ||||||||||||| ||| |||||||||||| ||| |||||| | ||||||||||||||||||  ||||| |||||||||    
T  8147115 tacttctagaaacacg-tttcttggtcaactcttcacgtgaaacaaatcttcagagaatatacggaaatcttcacgtttaaaatgaatcttcaagtaagc 8147017  T
Q  104 ggaacaa-------aatgatgtcgtaccaacatgttaagacatcatgtc--tgacatcttgctagaactaatgttttaataaaatgcagtcaatacatgt 194  Q
    |||||||        ||||| |||||||||||||| |||||||| ||||  |||||||||||||||||||||||||||| |||||| |  ||| ||||||    
T  8147016 ggaacaagacacgctatgatatcgtaccaacatgtcaagacatcgtgtctgtgacatcttgctagaactaatgttttaacaaaatgtacccaaaacatgt 8146917  T
Q  195 ctaaaaaccta 205  Q
    || ||||||||    
T  8146916 cttaaaaccta 8146906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 210
Target Start/End: Complemental strand, 20975535 - 20975343
Alignment:
Q  25 ttggtcaactctttacgcgaaacaaatctttagataatatatgaaaatcttcacgtttaaaa-caaatctccaagtaagcggaacaaaa-------tgat 116  Q
    |||||||||||||  |  || ||||||||||||||| ||||||||||| |||||| |||||| | |||||||||| ||||||| |||         ||||    
T  20975535 ttggtcaactcttcccatgatacaaatctttagatattatatgaaaatattcacgattaaaagcgaatctccaag-aagcggatcaaggcacattctgat 20975437  T
Q  117 gtcgtaccaacatgttaagacatcatgtctgacatcttgctagaactaatgttttaataaaatgcagtcaatacatgtctaaaaacctaacaat 210  Q
     |||| |||  |||||||| ||| |||||||||||||||||| |||||| | ||||| ||||| ||| ||| | ||||||||||||| ||||||    
T  20975436 ctcgtgccagaatgttaaggcattatgtctgacatcttgctataactaaaggtttaacaaaatacagccaacatatgtctaaaaacccaacaat 20975343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 114 - 188
Target Start/End: Original strand, 35510971 - 35511045
Alignment:
Q  114 gatgtcgtaccaacatgttaagacatcatgtctgacatcttgctagaactaatgttttaataaaatgcagtcaat 188  Q
    |||||||||||||||||| |||||||| ||||  ||||||||||| |||   |||||||| ||||||||| ||||    
T  35510971 gatgtcgtaccaacatgtcaagacatcttgtccaacatcttgctaaaacacttgttttaacaaaatgcagccaat 35511045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 7 - 203
Target Start/End: Complemental strand, 17871077 - 17870874
Alignment:
Q  7 ttctagaaacacgcttttttggtcaactctttacgcgaaacaaatctttagataatat-atgaaaatcttcacgtttaaaacaaatctccaagtaagcgg 105  Q
    |||||||||||||||| || ||||| ||||||||| |||  |||||||  || ||||| | | |||||||||||||||||| ||||||||||||||||||    
T  17871077 ttctagaaacacgcttctt-ggtcatctctttacgtgaattaaatcttcggagaatattaaggaaatcttcacgtttaaaataaatctccaagtaagcgg 17870979  T
Q  106 aacaaaa-------tgatgtcgtaccaacatgttaagacatcatgtctgacatcttgctagaactaatgttttaataaaatgcagtcaatacatgtctaa 198  Q
    ||||| |       |||||||||||||||||||||||||||| ||||||||||||| |||||| || |||||||| |||||| || ||| |||||||||     
T  17870978 aacaagacacgctatgatgtcgtaccaacatgttaagacatcttgtctgacatcttcctagaattattgttttaacaaaatgtagccaacacatgtctac 17870879  T
Q  199 aaacc 203  Q
    |||||    
T  17870878 aaacc 17870874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 118 - 197
Target Start/End: Original strand, 13959682 - 13959761
Alignment:
Q  118 tcgtaccaacatgttaagacatcatgtctgacatcttgctagaactaatgttttaataaaatgcagtcaatacatgtcta 197  Q
    |||||||||||| |||||||||| ||||||||||||||||||| ||| |||||||| |||||| |||||| |||||||||    
T  13959682 tcgtaccaacatattaagacatcttgtctgacatcttgctagagctattgttttaacaaaatgtagtcaacacatgtcta 13959761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 183
Target Start/End: Original strand, 13269441 - 13269626
Alignment:
Q  6 cttctagaaacacgcttttttggtcaactctttacgcgaaacaaatctttagataatatatgaaaatcttcacg-tttaaaa-caaatctccaagtaagc 103  Q
    |||||||||||||||| | || ||||||||||  || || |||||||||||||||  ||||||||||||||| | ||||||| | |||||||||| ||||    
T  13269441 cttctagaaacacgctatcttagtcaactcttcccgtgatacaaatctttagatatgatatgaaaatcttcaggatttaaaagcgaatctccaag-aagc 13269539  T
Q  104 ggaacaaaa-------tgatgtcgtaccaacatgttaagacatcatgtctgacatcttgctagaactaatgttttaataaaatgcag 183  Q
    ||| ||          ||||||||||||||||||||||||||| ||||||||||| || ||| |||||| |||||||  ||||||||    
T  13269540 ggatcatggcacgttctgatgtcgtaccaacatgttaagacattatgtctgacatttttctataactaaggttttaacgaaatgcag 13269626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 183
Target Start/End: Complemental strand, 11864580 - 11864509
Alignment:
Q  112 atgatgtcgtaccaacatgttaagacatcatgtctgacatcttgctagaactaatgttttaataaaatgcag 183  Q
    |||||||||||||||||| | |||| ||  |||| ||||||||||||||||   |||||||| |||||||||    
T  11864580 atgatgtcgtaccaacatatcaagatattttgtccgacatcttgctagaacacttgttttaacaaaatgcag 11864509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 179
Target Start/End: Complemental strand, 11426587 - 11426522
Alignment:
Q  114 gatgtcgtaccaacatgttaagacatcatgtctgacatcttgctagaactaatgttttaataaaat 179  Q
    ||||||||||||||||||  ||||||| ||||  |||||||||||||||   | ||||||||||||    
T  11426587 gatgtcgtaccaacatgtcgagacatcttgtccaacatcttgctagaacacttattttaataaaat 11426522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 6 - 208
Target Start/End: Original strand, 19145 - 19352
Alignment:
Q  6 cttctagaaacacgcttttttggtcaactctttacgcgaaacaaatctttagataatatatgaaaatcttcacgtttaaaacaaatctccaagtaagcgg 105  Q
    ||||||||| |||||| | ||||||||||||||    || ||||||||||||||| |  ||||||| ||||| | | ||||| |||||||||| |||| |    
T  19145 cttctagaaccacgctatcttggtcaactctttctatgatacaaatctttagatattccatgaaaagcttcatgataaaaacgaatctccaag-aagcag 19243  T
Q  106 aacaaaa-------tgatgtcgtaccaacatgttaagacatcatgtctgacatcttgctagaactaatgttttaataaaatgcagtcaatacatgtctaa 198  Q
    | ||| |       ||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||| ||||||||| ||||||||||||||    
T  19244 atcaagacacactctgatgtcgtaccaacatgttaagacattatgtctgacatcttgctataactaa-gttttaacaaaatgcagccaatacatgtctaa 19342  T
Q  199 aaacctaaca 208  Q
    ||||||||||    
T  19343 aaacctaaca 19352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 27 - 205
Target Start/End: Complemental strand, 10259672 - 10259487
Alignment:
Q  27 ggtcaactctttacgcgaaacaaatctttagataatatatgaaaatcttcacgtttaaaacaaatctccaagtaagcggaacaaa-------atgatgtc 119  Q
    ||||||||||| ||| |||||||||  | ||| |||||||| |||||||||  ||||| |  ||||||||||||||||||||||        ||||||||    
T  10259672 ggtcaactcttcacgtgaaacaaattgtcagagaatatatggaaatcttcatttttaatatgaatctccaagtaagcggaacaaggtacgctatgatgtc 10259573  T
Q  120 gtaccaacatgttaagacatcatgtctgacatcttgctagaactaatgttttaataaaatgcagtcaatacatgtctaaaaaccta 205  Q
    |||||||||||||||||||| || |||||||||||| |||||||||| |||||| ||| ||||| ||||||||||||| |||||||    
T  10259572 gtaccaacatgttaagacattatatctgacatcttggtagaactaatattttaacaaattgcagccaatacatgtctacaaaccta 10259487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 113 - 210
Target Start/End: Original strand, 18070515 - 18070612
Alignment:
Q  113 tgatgtcgtaccaacatgttaagacatcatgtctgacatcttgctagaactaatgttttaataaaatgcagtcaatacatgtctaaaaacctaacaat 210  Q
    |||||||||||||||||||||| |||| ||||||| |||||||||| |||||| ||||||| |||||| || ||||||||||||||||||||||||||    
T  18070515 tgatgtcgtaccaacatgttaatacattatgtctggcatcttgctataactaaagttttaacaaaatgaagccaatacatgtctaaaaacctaacaat 18070612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 162
Target Start/End: Complemental strand, 6628646 - 6628598
Alignment:
Q  114 gatgtcgtaccaacatgttaagacatcatgtctgacatcttgctagaac 162  Q
    ||||||||||||||||||||||||||| ||||  |||||||||||||||    
T  6628646 gatgtcgtaccaacatgttaagacatcttgtccaacatcttgctagaac 6628598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 181
Target Start/End: Original strand, 5299849 - 5299916
Alignment:
Q  114 gatgtcgtaccaacatgttaagacatcatgtctgacatcttgctagaactaatgttttaataaaatgc 181  Q
    |||||| ||||||||||| |||||||| ||||  |||||||||||||||   |||||||| |||||||    
T  5299849 gatgtcttaccaacatgtcaagacatcttgtccaacatcttgctagaacacttgttttaagaaaatgc 5299916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 182
Target Start/End: Complemental strand, 11917787 - 11917725
Alignment:
Q  120 gtaccaacatgttaagacatcatgtctgacatcttgctagaactaatgttttaataaaatgca 182  Q
    |||||||||||| |||||||| ||||  ||||||||||||||  | |||||||| ||||||||    
T  11917787 gtaccaacatgtcaagacatcctgtccaacatcttgctagaataattgttttaacaaaatgca 11917725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 30925470 - 30925401
Alignment:
Q  9 ctagaaacacgcttttttggtcaactctttacgcgaaacaaatctttagataatatatgaaaatcttcac 78  Q
    |||||||||||||  |||| |||||||||  |  || ||||||||||||||| ||||||||||| |||||    
T  30925470 ctagaaacacgctaatttgttcaactcttgccatgatacaaatctttagatattatatgaaaattttcac 30925401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 112 - 200
Target Start/End: Original strand, 1444851 - 1444938
Alignment:
Q  112 atgatgtcgtaccaacatgttaagacatcatgtctgacatcttgctagaactaatgttttaataaaatgcagtcaatacatgtctaaaa 200  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  1444851 atgatgtcgtaccaacgtgttaagacatcgtgtctgacatcttgctagaactaatgttttaa-aaaatgcagtcaatacatgtttaaaa 1444938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 122 - 210
Target Start/End: Complemental strand, 16207850 - 16207762
Alignment:
Q  122 accaacatgttaagacatcatgtctgacatcttgctagaactaatgttttaataaaatgcagtcaatacatgtctaaaaacctaacaat 210  Q
    ||||||||||||||||||| ||||||| ||||| ||||||||| |||||||| |||||| ||| |||||||||||||||||||||||||    
T  16207850 accaacatgttaagacatcttgtctgaaatctttctagaactattgttttaacaaaatgtagtaaatacatgtctaaaaacctaacaat 16207762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 208
Target Start/End: Complemental strand, 28847900 - 28847804
Alignment:
Q  112 atgatgtcgtaccaacatgttaagacatcatgtctgacatcttgctagaactaatgttttaataaaatgcagtcaatacatgtctaaaaacctaaca 208  Q
    ||||||| |||||||||||| |||||  | |||| |||||||||||||||||  |||||||| ||||||||| ||||||||||||| ||||||||||    
T  28847900 atgatgttgtaccaacatgtcaagaccacttgtccgacatcttgctagaactcttgttttaagaaaatgcagccaatacatgtctataaacctaaca 28847804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 211
Target Start/End: Complemental strand, 20296 - 20083
Alignment:
Q  6 cttctagaaacacgcttttttggtcaactctttacgcgaaacaaatctttagataatatat-gaaaatcttcacgtttaaaacaaatctccaagtaagcg 104  Q
    |||||||||||| |||| || ||||||||||||| | |||  ||||||||||| |||||   | |||||||||||||||||| |||| ||||||||||||    
T  20296 cttctagaaacatgcttctt-ggtcaactctttatgtgaatgaaatctttagagaatattcaggaaatcttcacgtttaaaataaatatccaagtaagcg 20198  T
Q  105 gaacaaaa-------tgatgtcgtaccaacatgttaagacatcatgtctgacatcttgctagaactaatgttttaataaaatgcagtcaatacatgtcta 197  Q
    ||||||         ||||||| |||||||||||||||||||| |||||||||||||||| |||||| |||||||  | |||| || ||| |||||||||    
T  20197 gaacaaggcacgctgtgatgtcataccaacatgttaagacatcttgtctgacatcttgctggaactattgttttagcataatgtagccaacacatgtcta 20098  T
Q  198 -aaaacctaacaatg 211  Q
     |||||| |||||||    
T  20097 caaaacccaacaatg 20083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 112 - 210
Target Start/End: Original strand, 24549944 - 24550042
Alignment:
Q  112 atgatgtcgtaccaacatgttaagacatcatgtctgacatcttgctagaactaatgttttaataaaatgcagtcaatacatgtctaaaaacctaacaat 210  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||| |||||| || |||| |||||||| ||||| ||||||    
T  24549944 atgatgtcgtaccaaaatgttaagacatcttgtctgacatcttgctagaactattgttttaacaaaatgtagccaatgcatgtctacaaacccaacaat 24550042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 112 - 209
Target Start/End: Original strand, 51111014 - 51111111
Alignment:
Q  112 atgatgtcgtaccaacatgttaagacatcatgtctgacatcttgctagaactaatgttttaataaaatgcagtcaatacatgtctaaaaacctaacaa 209  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| |||||| |  ||| ||||||||| ||||| |||||    
T  51111014 atgatgtcgtaccaacaggttaagacatcttgtctgacatcttgctagaactattgttttaacaaaatgtaaccaacacatgtctacaaacccaacaa 51111111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 49 - 203
Target Start/End: Original strand, 50058160 - 50058321
Alignment:
Q  49 aatctttagataatatatgaaaatcttcacgtttaaaa-caaatctccaagtaagcggaacaaaa-------tgatgtcgtaccaacatgttaagacatc 140  Q
    |||||||||||| |||||||||||||||||| |||||| | |||||| ||| ||||||| ||| |       ||||| |||||||||||||||||||||     
T  50058160 aatctttagatattatatgaaaatcttcacgattaaaatcgaatctctaag-aagcggatcaagacacgttctgatgccgtaccaacatgttaagacatt 50058258  T
Q  141 atgtctgacatcttgctagaactaatgttttaataaaatgcagtcaatacatgtctaaaaacc 203  Q
    ||||| ||||||||| || |||||| ||||||| | |||| || ||| | |||||||||||||    
T  50058259 atgtccgacatcttgttataactaaagttttaacacaatgtagccaacatatgtctaaaaacc 50058321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 113 - 210
Target Start/End: Complemental strand, 14911151 - 14911054
Alignment:
Q  113 tgatgtcgtaccaacatgttaagacatcatgtctgacatcttgctagaactaatgttttaataaaatgcagtcaatacatgtctaaaaacctaacaat 210  Q
    ||||||||||||||||||| |||||||    || |||||||||||||||||  |||||||| ||||||||| ||| ||| ||||| ||||||||||||    
T  14911151 tgatgtcgtaccaacatgtcaagacatttgttccgacatcttgctagaactcttgttttaacaaaatgcagccaacacaagtctacaaacctaacaat 14911054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 215
Target Start/End: Complemental strand, 12301321 - 12301218
Alignment:
Q  112 atgatgtcgtaccaacatgttaagacatcatgtctgacatcttgctagaac-taatgttttaataaaatgcagtcaatacatgtctaaaaacctaacaat 210  Q
    ||||||||||||  |||||| ||||||||  |||  ||||||||||||||| || |||||||| ||||||| ||||| |||| | |||||||||||||||    
T  12301321 atgatgtcgtactcacatgtcaagacatctggtccaacatcttgctagaacatattgttttaacaaaatgcggtcaacacat-tataaaaacctaacaat 12301223  T
Q  211 gatga 215  Q
     ||||    
T  12301222 tatga 12301218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 188
Target Start/End: Original strand, 25124176 - 25124250
Alignment:
Q  114 gatgtcgtaccaacatgttaagacatcatgtctgacatcttgctagaactaatgttttaataaaatgcagtcaat 188  Q
    ||||||||||||| |||| |||||||| ||||  |||||||| ||||||   |||||||| ||||||||| ||||    
T  25124176 gatgtcgtaccaatatgtcaagacatcttgtccaacatcttgttagaacatttgttttaacaaaatgcagccaat 25124250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 200
Target Start/End: Complemental strand, 1542 - 1458
Alignment:
Q  116 tgtcgtaccaacatgtt-aagacatcatgtctgacatcttgctagaactaatgttttaataaaatgcagtcaatacatgtctaaaa 200  Q
    ||||||||||||||||| |||||||  ||||| |||| ||||| ||| ||| ||||||| ||||||||| ||| ||||||||||||    
T  1542 tgtcgtaccaacatgtttaagacattgtgtctaacatattgcttgaattaa-gttttaacaaaatgcagccaacacatgtctaaaa 1458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0533 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 2468 - 2535
Alignment:
Q  113 tgatgtcgtaccaacatgttaagacatcatgtctgacatcttgctagaactaatgttttaataaaatg 180  Q
    ||||||| ||||||||||| |||| ||| | |||||||||||||||||||   |||||||| ||||||    
T  2468 tgatgtcataccaacatgtcaagatatcttatctgacatcttgctagaacacttgttttaacaaaatg 2535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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