View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1486_low_34 (Length: 240)
Name: NF1486_low_34
Description: NF1486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1486_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 116; Significance: 4e-59; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 37122886 - 37122701
Alignment:
| Q |
1 |
aaatatatctttattgattaatttcataatatgcaacattt-ctttttctaacttcannnnnnnnnnnnggtgacaaattttccaacaaattcttaataa |
99 |
Q |
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| T |
37122886 |
aaatatatctttattgattaatttcataatatgcaacatttactttttctaacttcatttttttttt----tgacattttttccaacaaattct-aataa |
37122792 |
T |
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| Q |
100 |
caccggattctgctgcctgcgtttttaatctttcatttatttgttttgtgggaaactgatattttactaccattaaattcactaatgtttt |
190 |
Q |
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| T |
37122791 |
caccggattctggtgcctgcgtttttaatctttcatttatttgttttgtgggaaactgatattttactaccattaaattcactaatgtttt |
37122701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 37122688 - 37122636
Alignment:
| Q |
174 |
aaattcactaatgttttgtatagttatcttttttattatggtataatatcctg |
226 |
Q |
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| T |
37122688 |
aaattcactaatgttttgtatagttatcttttttattatggtataatatcctg |
37122636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 73 - 225
Target Start/End: Complemental strand, 37112603 - 37112446
Alignment:
| Q |
73 |
acaaattttccaacaaattcttaataacaccggattctgctgcctgcgtttttaatctttcatttatttgttttgtgggaaactgatattttactaccat |
172 |
Q |
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| T |
37112603 |
acaatttttctaacgaattcttaataactctggattctgctacctgcgttttaaaccttttgtctatttgtttcgtgggaaaccgatactttactaccat |
37112504 |
T |
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| Q |
173 |
----taa-attcactaatgttttgtatagttatcttttttattatggtataatatcct |
225 |
Q |
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| T |
37112503 |
aagataatattcacttgtgttttgtatagttttaattttgattctggtacaatatcct |
37112446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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