View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1486_low_35 (Length: 237)
Name: NF1486_low_35
Description: NF1486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1486_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 57 - 188
Target Start/End: Original strand, 35914997 - 35915128
Alignment:
| Q |
57 |
cataggcatctttagcggtggacttatctcctgaattgtcatagtcagatgttgtgtttgagtaggaaaatcctacgcctgccggagattccaagaagag |
156 |
Q |
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| T |
35914997 |
cataggcatctttagcggtggacttatctcctgaattgtcatagtcagatgttgtgtttgagtaggaaaatcctactcctgccggagattccaagaagag |
35915096 |
T |
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| Q |
157 |
tacatttgcaactgcatatttcataaggatat |
188 |
Q |
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| T |
35915097 |
tacatttgcaactgcatatttcataaggatat |
35915128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 57 - 185
Target Start/End: Original strand, 35921369 - 35921497
Alignment:
| Q |
57 |
cataggcatctttagcggtggacttatctcctgaattgtcatagtcagatgttgtgtttgagtaggaaaatcctacgcctgccggagattccaagaagag |
156 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
35921369 |
cataggcatctttagcagtggacttatctcctgaattgtcatagtccgatgatgtgtttgagtaggaaaatcctacccctgctggagattccaagaagag |
35921468 |
T |
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| Q |
157 |
tacatttgcaactgcatatttcataagga |
185 |
Q |
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| T |
35921469 |
tacatttgccactgcatatttcataagga |
35921497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 77 - 188
Target Start/End: Original strand, 35910582 - 35910693
Alignment:
| Q |
77 |
gacttatctcctgaattgtcatagtcagatgttgtgtttgagtaggaaaatcctacgcctgccggagattccaagaagagtacatttgcaactgcatatt |
176 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| || || |||||||||| |
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| T |
35910582 |
gacttatctcctgatttgtcatagtcagatgttgtgtttgagtaggaaaatcctactcctgctggagattctaagaagagtacgttcgccactgcatatt |
35910681 |
T |
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| Q |
177 |
tcataaggatat |
188 |
Q |
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|||||| ||||| |
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| T |
35910682 |
tcataatgatat |
35910693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 80 - 188
Target Start/End: Original strand, 35940361 - 35940469
Alignment:
| Q |
80 |
ttatctcctgaattgtcatagtcagatgttgtgtttgagtaggaaaatcctacgcctgccggagattccaagaagagtacatttgcaactgcatatttca |
179 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| || || ||||||||||||| |
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| T |
35940361 |
ttatctcctgatttgtcatagtcagatgttgtgtttgagtaggaaaatcctattcctgctggagattccaagaagagtacgttcgccactgcatatttca |
35940460 |
T |
|
| Q |
180 |
taaggatat |
188 |
Q |
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||| ||||| |
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| T |
35940461 |
taatgatat |
35940469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 57 - 175
Target Start/End: Original strand, 35934775 - 35934893
Alignment:
| Q |
57 |
cataggcatctttagcggtggacttatctcctgaattgtcatagtcagatgttgtgtttgagtaggaaaatcctacgcctgccggagattccaagaagag |
156 |
Q |
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|||||||||||||||| |||||||||||||||| || | ||||||||| ||||||||||||||||||||||| || ||||| ||||| || |||||||| |
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| T |
35934775 |
cataggcatctttagcagtggacttatctcctgcttttttatagtcagaagttgtgtttgagtaggaaaatcccactcctgctggagactctaagaagag |
35934874 |
T |
|
| Q |
157 |
tacatttgcaactgcatat |
175 |
Q |
| |
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|| |||||||||||||||| |
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| T |
35934875 |
tatatttgcaactgcatat |
35934893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 80 - 187
Target Start/End: Original strand, 35927985 - 35928092
Alignment:
| Q |
80 |
ttatctcctgaattgtcatagtcagatgttgtgtttgagtaggaaaatcctacgcctgccggagattccaagaagagtacatttgcaactgcatatttca |
179 |
Q |
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||||||||||| |||||||||||||| ||||||||||| ||||||||||| || ||||| ||||| || ||||| ||||||||||||||||||||||||| |
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| T |
35927985 |
ttatctcctgacttgtcatagtcagaagttgtgtttgaataggaaaatcccactcctgctggagactctaagaatagtacatttgcaactgcatatttca |
35928084 |
T |
|
| Q |
180 |
taaggata |
187 |
Q |
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||| |||| |
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| T |
35928085 |
taatgata |
35928092 |
T |
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