View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1486_low_36 (Length: 223)
Name: NF1486_low_36
Description: NF1486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1486_low_36 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 223
Target Start/End: Complemental strand, 41559031 - 41558815
Alignment:
| Q |
7 |
acctttaccctacaaataaatattttaagaattagcaatatagcagtcatgatactagcatttaaacaatctcatctataagattgacgcaaactaaacc |
106 |
Q |
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| T |
41559031 |
acctttaccctacaaataaatattttaagaattagcaatatagcagtcatgatactagcatttaaacaatctcatctataagattgacgcaaactaaacc |
41558932 |
T |
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| Q |
107 |
tgagtacaatgaagaatcttagtaagtttatacaaaggcttatgaataattctttattaaaaagtgaatgaattgaattttatcacacacgtcaatgtcc |
206 |
Q |
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| T |
41558931 |
tgagtacaatgaagaatcttagtaagtttatacaaaggcttatgaataattctttattaaaaagtgaatgaattgaattttatcacacacgtcaatgtcc |
41558832 |
T |
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| Q |
207 |
aacaccgacatttgcca |
223 |
Q |
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| T |
41558831 |
aacaccgacatttgcca |
41558815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 6 - 166
Target Start/End: Complemental strand, 41542891 - 41542727
Alignment:
| Q |
6 |
aacctttaccctacaaataaatattttaagaattagcaatatagcag-tcatgatactagcatttaaacaatctca--tctataagattgacgcaaacta |
102 |
Q |
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|||| |||||||||||| |||| ||| ||||||||| || ||| ||| ||| | || ||| |||||||| ||||| |||||||||||| ||||||| |
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| T |
41542891 |
aaccattaccctacaaacaaatctttcaagaattagtaa-atatcagatcagggcaccagcttttaaacagtctcacatctataagattgtgacaaacta |
41542793 |
T |
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| Q |
103 |
aacctgagtacaatgaagaatcttagtaagtttat--acaaaggcttatgaataattctttattaa |
166 |
Q |
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| T |
41542792 |
aaccagagtacaatgaagaatcttagtaagattctgaccaaaggcttctgaataattctctattaa |
41542727 |
T |
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