View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1486_low_37 (Length: 213)

Name: NF1486_low_37
Description: NF1486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1486_low_37
NF1486_low_37
[»] chr2 (21 HSPs)
chr2 (57-195)||(10371343-10371481)
chr2 (15-195)||(10347262-10347442)
chr2 (24-115)||(11987957-11988048)
chr2 (52-195)||(9061678-9061817)
chr2 (57-180)||(10335276-10335397)
chr2 (24-102)||(12019356-12019434)
chr2 (24-179)||(10352622-10352770)
chr2 (27-115)||(9066106-9066194)
chr2 (24-154)||(9315554-9315679)
chr2 (32-131)||(9320528-9320623)
chr2 (52-154)||(9274099-9274197)
chr2 (24-154)||(9291473-9291598)
chr2 (24-102)||(12006563-12006643)
chr2 (64-115)||(10340974-10341025)
chr2 (96-184)||(7116557-7116644)
chr2 (24-154)||(8574000-8574131)
chr2 (32-91)||(9364210-9364269)
chr2 (24-66)||(12013019-12013061)
chr2 (135-195)||(9272200-9272263)
chr2 (96-168)||(9364107-9364177)
chr2 (25-78)||(10335412-10335465)
[»] chr3 (1 HSPs)
chr3 (24-184)||(37461974-37462130)
[»] chr1 (4 HSPs)
chr1 (55-106)||(29468278-29468329)
chr1 (27-86)||(29422911-29422970)
chr1 (24-106)||(29453767-29453849)
chr1 (24-80)||(29443793-29443849)


Alignment Details
Target: chr2 (Bit Score: 139; Significance: 6e-73; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 57 - 195
Target Start/End: Complemental strand, 10371481 - 10371343
Alignment:
Q  57 ttgtttatgtttatgtatttgacaatgtgtatatgcttgatttcaaaagaaacaaaaaattgacaacagtgtatgatgtgtgttagtttaagagttgagc 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10371481 ttgtttatgtttatgtatttgacaatgtgtatatgcttgatttcaaaagaaacaaaaaattgacaacagtgtatgatgtgtgttagtttaagagttgagc 10371382  T
Q  157 ttatgactagctaaagaatttgcttaaagaaagaatttt 195  Q
    |||||||||||||||||||||||||||||||||||||||    
T  10371381 ttatgactagctaaagaatttgcttaaagaaagaatttt 10371343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 15 - 195
Target Start/End: Complemental strand, 10347442 - 10347262
Alignment:
Q  15 catagggtaaaggattttctaattactttaaagtctttacctttgtttatgtttatgtatttgacaatgtgtatatgcttgatttcaaaagaaacaaaaa 114  Q
    |||||| || || |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||    
T  10347442 cataggatagagtattttctaattactttgaagtctttacctt-gtttatgtttatgtatttgacaatgtctatatgcttgcttttaaaagaaacaaaaa 10347344  T
Q  115 attgacaacagtgtatgatgtgtgttagtttaagagttgagcttatgactagctaaagaatttgctt-aaagaaagaatttt 195  Q
     ||||||||| |||||| | ||||||||||||||||||||||||  ||||||||||||||||| ||| ||||||||||||||    
T  10347343 gttgacaacaatgtatgctatgtgttagtttaagagttgagcttgggactagctaaagaattttcttaaaagaaagaatttt 10347262  T

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Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 11987957 - 11988048
Alignment:
Q  24 aaggattttctaattactttaaagtctttacctttgtttatgtttatgtatttgacaatgtgtatatgcttgatttcaaaagaaacaaaaaa 115  Q
    |||||||||||||||||||| |||||| ||||||||||||||| ||| ||||||||||||| | ||||||||||||||||||||||||||||    
T  11987957 aaggattttctaattactttgaagtctctacctttgtttatgtatatatatttgacaatgtctgtatgcttgatttcaaaagaaacaaaaaa 11988048  T

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Target: chr2; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 52 - 195
Target Start/End: Original strand, 9061678 - 9061817
Alignment:
Q  52 tacctttgtttatgtttatgtatttgacaatgtgtatatgcttgatttcaaaagaaacaaaaaattgacaacagtgtatgatgtgtgttagtttaagagt 151  Q
    ||||||||||||||| |||||    |||||||||| |||||| ||||||||||||||||||||||| | |||| |||||| | ||| |||||||| ||||    
T  9061678 tacctttgtttatgtatatgt----gacaatgtgtgtatgctggatttcaaaagaaacaaaaaattaataacattgtatgctatgttttagtttaggagt 9061773  T
Q  152 tgagcttatgactagctaaagaatttgcttaaagaaagaatttt 195  Q
    ||| ||| ||||||| |||||||||| ||||||||| |||||||    
T  9061774 tgaccttgtgactagataaagaatttacttaaagaacgaatttt 9061817  T

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Target: chr2; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 10335397 - 10335276
Alignment:
Q  57 ttgtttatgtttatgtatttgacaatgtgtatatgcttgatttcaaaagaaacaaaaaattgacaacagtgtatgatgtgtgttagtttaagagttgagc 156  Q
    |||||||||| ||||||||||||||||||| |||||  |||||| ||||||||||||||  ||||||| |||||| | ||||||||||| |||||||| |    
T  10335397 ttgtttatgtatatgtatttgacaatgtgtctatgcc-gatttccaaagaaacaaaaaaa-gacaacaatgtatgctatgtgttagttttagagttgacc 10335300  T
Q  157 ttatgactagctaaagaatttgct 180  Q
    || ||||||||| |||||||||||    
T  10335299 ttgtgactagcttaagaatttgct 10335276  T

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Target: chr2; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 24 - 102
Target Start/End: Original strand, 12019356 - 12019434
Alignment:
Q  24 aaggattttctaattactttaaagtctttacctttgtttatgtttatgtatttgacaatgtgtatatgcttgatttcaa 102  Q
    ||||||| |||||||||||| |||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  12019356 aaggattctctaattactttgaagtctctacctttgtttatgtatatgtatttgacaatgtgtgtatgcttgatttcaa 12019434  T

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Target: chr2; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 24 - 179
Target Start/End: Complemental strand, 10352770 - 10352622
Alignment:
Q  24 aaggattttctaattactttaaagtctttacctttgtttatgtttatgtatttgacaatgtgtatatgcttgatttcaaaagaaacaaaaaattgacaac 123  Q
    ||||||| |||||||||||| | |||||||||||||||||||| ||||      ||||||||| ||||||| ||||||||||||||||||||  ||||||    
T  10352770 aaggattctctaattactttgacgtctttacctttgtttatgtatatg------acaatgtgtgtatgctttatttcaaaagaaacaaaaaa-agacaac 10352678  T
Q  124 agtgtatgatgtgtgttagtttaagagttgagcttatgactagctaaagaatttgc 179  Q
    | |||||| | ||||||  |||| ||||||| ||| ||| | ||||||||||||||    
T  10352677 aatgtatgctatgtgttgttttaggagttgaccttgtgagttgctaaagaatttgc 10352622  T

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Target: chr2; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 9066106 - 9066194
Alignment:
Q  27 gattttctaattactttaaagtctttacctttgtttatgtttatgtatttgacaatgtgtatatgcttgatttcaaaagaaacaaaaaa 115  Q
    |||| |||||||||||| |||| | |||||||||||||||  |||||||||||||||||| ||||||||||| |||||||||| |||||    
T  9066106 gattctctaattactttgaagtttctacctttgtttatgtacatgtatttgacaatgtgtgtatgcttgattccaaaagaaactaaaaa 9066194  T

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Target: chr2; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 24 - 154
Target Start/End: Complemental strand, 9315679 - 9315554
Alignment:
Q  24 aaggattttctaattactttaaagtctttacctttgtttatgtttatgtatttgacaatgtgtatatgcttgatttcaaaagaaacaaaaaattgacaac 123  Q
    |||||||  |||||||||||||| ||| ||||||||||||| | |||||    |||| ||||| | |||| ||||||||||||| |||||||||||||||    
T  9315679 aaggattccctaattactttaaattctctacctttgtttatctctatgt----gacattgtgtgtgtgctggatttcaaaagaa-caaaaaattgacaac 9315585  T
Q  124 agtgtatgatgtgtgttagtttaagagttga 154  Q
    | || ||||| |||||||||||| |||||||    
T  9315584 aatgcatgatatgtgttagtttaggagttga 9315554  T

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Target: chr2; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 32 - 131
Target Start/End: Complemental strand, 9320623 - 9320528
Alignment:
Q  32 tctaattactttaaagtctttacctttgtttatgtttatgtatttgacaatgtgtatatgcttgatttcaaaagaaacaaaaaattgacaacagtgtatg 131  Q
    |||||||||||| |||||| |||||||||||| || |||||    |||||||||| |||||| |||||||||||||||||||||| |||| || ||||||    
T  9320623 tctaattactttgaagtctctacctttgtttacgtatatgt----gacaatgtgtgtatgctggatttcaaaagaaacaaaaaatggacagcaatgtatg 9320528  T

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Target: chr2; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 52 - 154
Target Start/End: Complemental strand, 9274197 - 9274099
Alignment:
Q  52 tacctttgtttatgtttatgtatttgacaatgtgtatatgcttgatttcaaaagaaacaaaaaattgacaacagtgtatgatgtgtgttagtttaagagt 151  Q
    ||||||||||||||| |||||    |||||||||| ||||| ||||||| ||||||  ||||||||||||||| |||||| | |||||| ||||||||||    
T  9274197 tacctttgtttatgtatatgt----gacaatgtgtgtatgcatgatttctaaagaacaaaaaaattgacaacaatgtatgctatgtgttggtttaagagt 9274102  T

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Target: chr2; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 154
Target Start/End: Complemental strand, 9291598 - 9291473
Alignment:
Q  24 aaggattttctaattactttaaagtctttacctttgtttatgtttatgtatttgacaatgtgtatatgcttgatttcaaaagaaacaaaaaattgacaac 123  Q
    ||||||| |||||||||||| |||||| ||||||||||||||| ||||    ||||||||||| |||||| ||| ||||||| ||  |||||||||||||    
T  9291598 aaggattctctaattactttgaagtctctacctttgtttatgtatatg----tgacaatgtgtgtatgctggatgtcaaaag-aattaaaaattgacaac 9291504  T
Q  124 agtgtatgatgtgtgttagtttaagagttga 154  Q
    | |||||| | ||| |  |||||||||||||    
T  9291503 aatgtatgctatgtatatgtttaagagttga 9291473  T

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Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 102
Target Start/End: Original strand, 12006563 - 12006643
Alignment:
Q  24 aaggattttctaattactttaaagtctttacctttgtttatgtttat--gtatttgacaatgtgtatatgcttgatttcaa 102  Q
    ||||||| |||||||||||| |||||| ||||||||||||||| |||  |||||||||  ||||| |||||| ||||||||    
T  12006563 aaggattctctaattactttgaagtctctacctttgtttatgtatataagtatttgactctgtgtgtatgctggatttcaa 12006643  T

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Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 10341025 - 10340974
Alignment:
Q  64 tgtttatgtatttgacaatgtgtatatgcttgatttcaaaagaaacaaaaaa 115  Q
    ||||| ||||| ||||||||||| ||||||| ||||||||||||||||||||    
T  10341025 tgtttgtgtatatgacaatgtgtgtatgctttatttcaaaagaaacaaaaaa 10340974  T

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Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 184
Target Start/End: Original strand, 7116557 - 7116644
Alignment:
Q  96 atttcaaaagaaacaaaaaattgacaacagtgtatgatgtgtgttagtttaagagttgagcttatgactagctaaagaatttgcttaaa 184  Q
    |||||||||||||||| || ||||| ||| |||||| | |||||||| ||||||||||| ||| || ||||||| | |||||| |||||    
T  7116557 atttcaaaagaaacaacaa-ttgaccacaatgtatgctatgtgttagcttaagagttgaccttgtgtctagctatataatttgattaaa 7116644  T

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Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 154
Target Start/End: Original strand, 8574000 - 8574131
Alignment:
Q  24 aaggattttctaattactttaaagtctttacctttgtttatgtttatgtatttgacaatgtgt------atatgcttgatttcaaaagaaacaaaaaatt 117  Q
    ||||||| |||||||||||| |||| | ||||||||||||||| ||||    |||||||||||       | |||| ||||||||||| |||||||||||    
T  8574000 aaggattctctaattactttgaagtttatacctttgtttatgtatatg----tgacaatgtgtgtgtgactgtgctggatttcaaaag-aacaaaaaatt 8574094  T
Q  118 gacaacagtgtatgatgtgtgttagtttaagagttga 154  Q
    || |||| ||||||   ||||||||||||| ||||||    
T  8574095 gagaacaatgtatgccatgtgttagtttaatagttga 8574131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 9364269 - 9364210
Alignment:
Q  32 tctaattactttaaagtctttacctttgtttatgtttatgtatttgacaatgtgtatatg 91  Q
    |||||||||||| |||||| ||||||||||||||| ||||||| |||  |||||| ||||    
T  9364269 tctaattactttgaagtctatacctttgtttatgtatatgtatctgagcatgtgtgtatg 9364210  T

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Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 12013019 - 12013061
Alignment:
Q  24 aaggattttctaattactttaaagtctttacctttgtttatgt 66  Q
    ||||||| |||||||||||| |||||| |||||||||||||||    
T  12013019 aaggattctctaattactttgaagtctctacctttgtttatgt 12013061  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 9272263 - 9272200
Alignment:
Q  135 tgtgttagtttaagagttgagcttatgactagcta---aagaatttgcttaaagaaagaatttt 195  Q
    |||| ||||||||||||||| ||| ||||||||||   ||  ||||||||||||||||||||||    
T  9272263 tgtgctagtttaagagttgaccttgtgactagctagctaaagatttgcttaaagaaagaatttt 9272200  T

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Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 168
Target Start/End: Complemental strand, 9364177 - 9364107
Alignment:
Q  96 atttcaaaagaaacaaaaaattgacaacagtgtatgatgtgtgttagtttaagagttgagcttatgactagct 168  Q
    |||||||||||||||||| |  |||||| ||||||| | |||||  ||||||||||||| ||| |||||||||    
T  9364177 atttcaaaagaaacaaaaca--gacaactgtgtatgttatgtgtcggtttaagagttgaccttgtgactagct 9364107  T

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Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 10335465 - 10335412
Alignment:
Q  25 aggattttctaattactttaaagtctttacctttgtttatgtttatgtatttga 78  Q
    |||||| |||||||||| |  |||| |||||||||||||||| |||||||||||    
T  10335465 aggattctctaattactctggagtcgttacctttgtttatgtatatgtatttga 10335412  T

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Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 24 - 184
Target Start/End: Complemental strand, 37462130 - 37461974
Alignment:
Q  24 aaggattttctaattactttaaagtctttacctttgtttatgtttatgtatttgacaatgtgtatatgcttgatttcaaaagaaacaaaaaattgacaac 123  Q
    ||||||| |||||||||||| |||||| ||||||||||||||| |||||    |||||||||| |||||| |||||||||||||| ||||||||||||||    
T  37462130 aaggattctctaattactttgaagtctctacctttgtttatgtatatgt----gacaatgtgtgtatgctagatttcaaaagaaataaaaaattgacaac 37462035  T
Q  124 agtgtatgatgtgtgttagtttaagagttgagcttatgactagctaaagaatttgcttaaa 184  Q
    | || ||  | ||||||||||||||| |||| ||| ||||||||||||||||| |||||||    
T  37462034 aatgaattctatgtgttagtttaagaattgaccttgtgactagctaaagaattcgcttaaa 37461974  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 55 - 106
Target Start/End: Original strand, 29468278 - 29468329
Alignment:
Q  55 ctttgtttatgtttatgtatttgacaatgtgtatatgcttgatttcaaaaga 106  Q
    |||||||||||| ||||||||||||||||||| |||||| ||||||||||||    
T  29468278 ctttgtttatgtatatgtatttgacaatgtgtgtatgctggatttcaaaaga 29468329  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 29422970 - 29422911
Alignment:
Q  27 gattttctaattactttaaagtctttacctttgtttatgtttatgtatttgacaatgtgt 86  Q
    |||| |||||||| ||| |||||| ||||||||||||||| ||||||||||||| |||||    
T  29422970 gattctctaattattttgaagtctctacctttgtttatgtatatgtatttgacattgtgt 29422911  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 29453767 - 29453849
Alignment:
Q  24 aaggattttctaattactttaaagtctttacctttgtttatgtttatgtatttgacaatgtgtatatgcttgatttcaaaaga 106  Q
    ||||||| |||||||||||| |||||| |||||  |||||||| ||| |||  |||||||||| |||||| ||||||| ||||    
T  29453767 aaggattctctaattactttgaagtctctacctaagtttatgtatatctatccgacaatgtgtgtatgctggatttcataaga 29453849  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 29443793 - 29443849
Alignment:
Q  24 aaggattttctaattactttaaagtctttacctttgtttatgtttatgtatttgaca 80  Q
    ||||||| |||||||| ||| |||||| ||||||||||||||| | |||||||||||    
T  29443793 aaggattctctaattattttgaagtctctacctttgtttatgtatgtgtatttgaca 29443849  T

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