View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1486_low_4 (Length: 497)
Name: NF1486_low_4
Description: NF1486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1486_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 10 - 480
Target Start/End: Complemental strand, 9105564 - 9105094
Alignment:
| Q |
10 |
agtgagatgaatgatcagcctaccgaaaatagagtcaacacactcgtgagtgcatcaggtcctccacaaactgagaaaattaccgagcctaccaaaaaga |
109 |
Q |
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| T |
9105564 |
agtgagatgaacgatcagcctaccgaaaatagagtcaacacactcgtgagtgcatcaggtcctccacaaactgagaaaattaccgagcctaccaaaaaga |
9105465 |
T |
|
| Q |
110 |
gagttagaggtgcaacgcgaatggcacattttttgcttaaacgtttgaatggtgaaaagattccgattgacttcgatcaatataccaaaaagcctttagg |
209 |
Q |
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| T |
9105464 |
gagttagaggtgcaacgcgaatggcacattttttgcttaaacgtttgaatggtgaaaagattctgattgactttgatcaatataccaaaaagcctttagg |
9105365 |
T |
|
| Q |
210 |
ggaaaacagnnnnnnnttcaaaagtcatgtgggttacattgctagaagcaaagtcagtattttggtggataattgggatcttgtaagcgtgactgtcaaa |
309 |
Q |
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| T |
9105364 |
ggaaaactgaaaaaaattcaaaagtcatgtgggttacattgctagaagcaaagtcagtattttggtggataattgggatcttgtaagcgtgactgtcaaa |
9105265 |
T |
|
| Q |
310 |
gacaagatttgggaagatatcatggtaatactatttatgattgtcagttgtaccacttaattatattatttccatacactaactcttttatctgctatat |
409 |
Q |
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| T |
9105264 |
gacaagatttgggaagatatcatggtaatactatttatgattgtcagttgtaccacttaattatattatttccatacactaactcttttatctgctatat |
9105165 |
T |
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| Q |
410 |
aacataggaacaatgggatattcctgatactcatgatatttcaaaattgaaagacaaatggctatcctatg |
480 |
Q |
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| T |
9105164 |
aacataggaacaatgggatattcctgatactcatgatatttcaaaattgaaagacaaatggctatcctatg |
9105094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 257 - 480
Target Start/End: Original strand, 41076322 - 41076545
Alignment:
| Q |
257 |
gcaaagtcagtattttggtggataattgggatcttgtaagcgtgactgtcaaagacaagatttgggaagatatcatggtaatactatttatgattgtcag |
356 |
Q |
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| T |
41076322 |
gcaaagtcagtatttttgtggatcattgggatcttgtaagcgagactgttaaagaccagatttaggaagatatcatggtaatactatttatgattgtcag |
41076421 |
T |
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| Q |
357 |
ttgtaccacttaattatattatttccatacactaactcttttatctgctatataacataggaacaatgggatattcctgatactcatgatatttcaaaat |
456 |
Q |
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| T |
41076422 |
ttgtaacacttaattatattatttccatgcactaactcttttatctgctatataacacaggaacaatgggatattccaaatactcatgatatttcaaaat |
41076521 |
T |
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| Q |
457 |
tgaaagacaaatggctatcctatg |
480 |
Q |
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| T |
41076522 |
tgaaagacaaatggatatcctatg |
41076545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 171; Significance: 1e-91; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 159 - 480
Target Start/End: Complemental strand, 22819880 - 22819556
Alignment:
| Q |
159 |
tggtgaaaagattccgattgacttcgatcaatataccaaaaagcctttaggggaaaacagnnnnnnn-ttcaaaagtcatgtgggttacattgctagaag |
257 |
Q |
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|||||||| ||| |||||||| |||||| || ||||||| ||||||||||||| |||| ||||||||||||||||||| |||||||||||| |
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| T |
22819880 |
tggtgaaaggataccgattgaattcgatgtatgaaccaaaacgcctttaggggaatacagaagaaaaattcaaaagtcatgtgggttccattgctagaag |
22819781 |
T |
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| Q |
258 |
caaagtcagtattttggtggataattgggatcttgtaagcgtgactgtcaaagacaagatttgggaagatatcatggtaatactatttatgattgtcagt |
357 |
Q |
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|||||| |||||||||||| || ||||||||||| |||||| |||| | |||||| ||||||| ||||||||||||||| ||||||||| |||||||||| |
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| T |
22819780 |
caaagttagtattttggtgaatcattgggatcttataagcg-gactattaaagaccagatttgagaagatatcatggtattactatttacgattgtcagt |
22819682 |
T |
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| Q |
358 |
tgtaccacttaattatattatttccatacactaactcttttatctgctatataacataggaacaatgggatattcc---tgatactcatgatatttcaaa |
454 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||| || |
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| T |
22819681 |
tgtaacacttaattatattatttccgtacactaactcttttatctgctatataacacaggaacaatgggatattccaaataatactcatgatatttataa |
22819582 |
T |
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| Q |
455 |
attgaaagacaaatggctatcctatg |
480 |
Q |
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|||||||||||||||||||||||||| |
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| T |
22819581 |
attgaaagacaaatggctatcctatg |
22819556 |
T |
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