View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1486_low_5 (Length: 478)
Name: NF1486_low_5
Description: NF1486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1486_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Complemental strand, 20852941 - 20852480
Alignment:
| Q |
1 |
tggttgtacaaatatcatttctcctaaaatatgttagataaccgtggtaaagtacataattaaggacggtgttaagaaataaaaaattgttaagataaat |
100 |
Q |
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| T |
20852941 |
tggttgtacaaatatcatttctcctaaaatatgttagatgaccgtggtaaagtacataattaaggacggtgttaagaaataaaaaattgttaagataaat |
20852842 |
T |
|
| Q |
101 |
ttgatgcaatgccagtgtaaatctttatttattgtcaatcaattataaatcatcctgttgg--tcattccttgggtgttggaggtacaattaatc-tttt |
197 |
Q |
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||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||| |||| |
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| T |
20852841 |
ttgatgcaatgtatgtgtaaatctttatatattgtcaatcaattataaatcatcctgttgggatcattccttgggggttggaggtgcaattaatcttttt |
20852742 |
T |
|
| Q |
198 |
gaattatatgaactacaattaatcattccttgtgatctgataaactattcatttcattggccagcaaaagtttgaccctttttgtaaattaaatgatcta |
297 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20852741 |
gaattatatgaacaacaattaatcattccttgtgatctgataaactattcatttcattggccagcaaaagtttgaccctttttgtaaattaaatgatcta |
20852642 |
T |
|
| Q |
298 |
caacttgtttgtatgggacaagg-ttataatggttgatttgttggatgtgatgaatttgtttctagttttagtgaatgtagactccctgctggttcgata |
396 |
Q |
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|||||||||||| |||||||||| || |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
20852641 |
caacttgtttgtgtgggacaaggtttttaatggttgatttgttggatgtcatggatttgtttctagttttagtgaatgtagact-cctgctggttcgata |
20852543 |
T |
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| Q |
397 |
atgcctctattgatggaatgttttcggttcaatccttgtatgaccatctcttggagaggtctt |
459 |
Q |
| |
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| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20852542 |
aggcctctcttgatggaatgttttcggttcaatccttgtatgaccatctcttggagaggtctt |
20852480 |
T |
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