View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1486_low_6 (Length: 475)

Name: NF1486_low_6
Description: NF1486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1486_low_6
NF1486_low_6
[»] chr3 (11 HSPs)
chr3 (7-471)||(23036509-23036974)
chr3 (9-471)||(23039380-23039849)
chr3 (9-468)||(23146262-23146724)
chr3 (384-471)||(23024611-23024698)
chr3 (352-456)||(23033053-23033157)
chr3 (367-471)||(23140385-23140489)
chr3 (374-471)||(23017401-23017498)
chr3 (17-198)||(23017869-23018050)
chr3 (384-471)||(23149097-23149184)
chr3 (9-220)||(23033451-23033655)
chr3 (105-198)||(23149496-23149589)
[»] chr6 (2 HSPs)
chr6 (17-232)||(21780514-21780731)
chr6 (377-471)||(21780152-21780246)
[»] scaffold0554 (2 HSPs)
scaffold0554 (373-471)||(6317-6415)
scaffold0554 (9-199)||(5714-5901)
[»] chr1 (2 HSPs)
chr1 (382-466)||(12637342-12637426)
chr1 (379-457)||(15885531-15885609)
[»] scaffold0059 (1 HSPs)
scaffold0059 (382-466)||(62497-62581)


Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 7 - 471
Target Start/End: Complemental strand, 23036974 - 23036509
Alignment:
Q  7 gattcatcggcaaactgatcagatattagaaaacatcatcaatgagcataaagaggaaaagtacacaaaagccaaagatgatcaaggtaaagtggaagaa 106  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  23036974 gattcatcgacaaactgatcagatattagaaaacatcatcaatgagcataaagaggaaaagtacacaaaagccaaagatgatcaaggtagagtagaagaa 23036875  T
Q  107 gatctggtagacgttctgttaaattacgaggatggtagaaaccaagacctttccttgacaaaaaacaatatcaaggccataatcatggtaagcgaattaa 206  Q
    ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  23036874 gatctcgtagacgttctcttaaattacgaggatggcagaaaccaagacctttccttgacaaaaaacaatatcaaggccataataatggtaagcgaattaa 23036775  T
Q  207 ctttccaaatacttcgaagaagaaaaactacttttcaaaagaaaaatttaggtgaatagttaaaatctgcttgcatcttatatctctactctgtagcatt 306  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||    
T  23036774 ctttccaaatacttcgaagaagaaaaactactttacaaaagaaaaatttagatgaataattaaaatctgctcgcatcttatatctctactctgtagcatt 23036675  T
Q  307 ggatgctatttgttagtt-tctttttatatatcgccttaaacattcttggatttgcttgaacttactgatagctacttttcaggacatttttggtgctgg 405  Q
    ||||||||| |  ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23036674 ggatgctatctactagttgtctttttatatatcgccttaaagattcttggatttgcttgaacttactgatagctacttttcaggacatttttggtgctgg 23036575  T
Q  406 aggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaggaatccaagaataat 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23036574 aggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaggaatccaagaataat 23036509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 9 - 471
Target Start/End: Complemental strand, 23039849 - 23039380
Alignment:
Q  9 ttcatcggcaaactgatcagatattagaaaacatcatcaatgagcataaagaggaaaagtacacaaaagccaaagatgatcaaggtaaagtggaagaaga 108  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23039849 ttcatcgacaaactgatcagatattagaaaacatcatcaatgagcataaagaggaaaagtacacaaaagccaaagatgatcaaggtaaagtagaagaaga 23039750  T
Q  109 tctggtagacgttctgttaaattacgaggatggtagaaaccaagacctttccttgacaaaaaacaatatcaaggccataatcatggtaagcgaattaac- 207  Q
    ||| ||||||||||| ||||| || ||||| ||||| ||||| ||  || |||| ||||||||||||||||||||||||||| |||||||| |||||||     
T  23039749 tctcgtagacgttctcttaaaatatgaggacggtagcaaccaggagtttaccttaacaaaaaacaatatcaaggccataatcctggtaagcaaattaacc 23039650  T
Q  208 -tttccaaatac-ttcgaagaagaaaaactacttttcaaaagaaaaatttaggtgaatagttaaaatctgcttgcatcttatatctctactctgtagcat 305  Q
      || ||||||| ||| ||| |||||||||  ||| |   || ||||||||  |  ||| | |||| || |  ||||||||||| | |  | |||| |||    
T  23039649 tctttcaaatacattcaaag-agaaaaacttgtttactccagtaaaatttaaatttatattgaaaaccttcccgcatcttatatttattgtttgtaacat 23039551  T
Q  306 tggatgctatttgttagtt-tctttttatatatcgccttaaacattcttggat----ttgcttgaacttactgatagctacttttcaggacatttttggt 400  Q
    |||||||||  ||   ||| |||||||||||||| | ||| ||||||||||||    |||||||| |||| |||||||||||||||||||| ||||||||    
T  23039550 tggatgctacatgcatgttgtctttttatatatcactttagacattcttggattagcttgcttgaccttattgatagctacttttcaggacgtttttggt 23039451  T
Q  401 gctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaggaatccaagaataat 471  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||| |||||||||||||    
T  23039450 gctggaggtgagacatcagcaagcaccatagactgggcaatggtagaaatgataagggatccaagaataat 23039380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 9 - 468
Target Start/End: Complemental strand, 23146724 - 23146262
Alignment:
Q  9 ttcatcggcaaactgatcagatattagaaaacatcatcaatgagcataaagaggaaaagtacacaaaagccaaagatgatcaaggtaaagtggaagaaga 108  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23146724 ttcatcgacaaactgatcagatatttgaaaacatcatcaatgagcataaagaggaaaagtacacaaaagccaaagatgatcaaggtaaagtagaagaaga 23146625  T
Q  109 tctggtagacgttctgttaaattacgaggatggtagaaaccaagacctttccttgacaaaaaacaatatcaaggccataatcatggtaagcgaattaa-c 207  Q
    |||| |||||||||| ||||| || ||||| ||||| ||||| ||  || |||| ||||||||||||||||||||||||||| |||||||| |||||| |    
T  23146624 tctgatagacgttctcttaaaatatgaggacggtagcaaccaggagtttaccttaacaaaaaacaatatcaaggccataatcctggtaagcaaattaatc 23146525  T
Q  208 t-ttccaaatac-ttcgaagaagaaaaactacttttcaaaagaaaaatttaggtgaatagttaaaatctgcttgcatcttatatctctactctgtagcat 305  Q
    | |||||||||| ||| ||| |||||||||  ||| |   || ||||||||  |    | | |||| || |   |||||||||| ||   |||||||| |    
T  23146524 tcttccaaatacattcaaag-agaaaaacttgtttactccagtaaaatttaaattttaattgaaaaccttcccacatcttatatgtcatatctgtagcgt 23146426  T
Q  306 tggatgctatttgttagtt-tctttttatatatcgccttaaacattcttggatttgcttgaacttactgatagctacttttcaggacatttttggtgctg 404  Q
    |||||||||| ||   |||  ||||||||||||| | | | ||||||||||||| |||| | |||| ||||||||||||| ||||||||||||| |||||    
T  23146425 tggatgctatatgcatgttgactttttatatatcacttaagacattcttggattagcttaaccttattgatagctactttacaggacatttttgctgctg 23146326  T
Q  405 gaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaggaatccaagaat 468  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||| | ||||||||||    
T  23146325 gaggtgagacatcagcaagcaccatagattgggcaatggtagaattggtaaaggatccaagaat 23146262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 384 - 471
Target Start/End: Complemental strand, 23024698 - 23024611
Alignment:
Q  384 ttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaggaatccaagaataat 471  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  23024698 ttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaagaatccaagaataat 23024611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 352 - 456
Target Start/End: Complemental strand, 23033157 - 23033053
Alignment:
Q  352 ttggatttgcttgaacttactgatagctacttttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatg 451  Q
    ||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||    
T  23033157 ttggatttggttgaccttattgatagctacttttcaggacatttttggtgctggaggcgagacatcagcaagcaccatagattgggcgatgacagaaatg 23033058  T
Q  452 gtaag 456  Q
     ||||    
T  23033057 ataag 23033053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 367 - 471
Target Start/End: Complemental strand, 23140489 - 23140385
Alignment:
Q  367 cttactgatagctacttttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaggaatccaaga 466  Q
    |||| |||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||    
T  23140489 cttagtgatagttattgttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatgataagggatccaaga 23140390  T
Q  467 ataat 471  Q
    |||||    
T  23140389 ataat 23140385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 374 - 471
Target Start/End: Complemental strand, 23017498 - 23017401
Alignment:
Q  374 atagctacttttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaggaatccaagaataat 471  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||  ||||||| |||||||||||||||||||    
T  23017498 atagctacttttcaggacattttcggtggtggaggtgagacatcagcaagcaccacagattgggcaatgatagaaatgataaggaatccaagaataat 23017401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 23018050 - 23017869
Alignment:
Q  17 caaactgatcagatattagaaaacatcatcaatgagcataaagaggaaaagtacacaaaagccaaagatgatcaaggtaaagtggaagaagatctggtag 116  Q
    ||||| ||| |||||||||| ||||||||  |||| ||||||  ||||||||||||||||| ||||| |||||||||| | || | ||||||||||||||    
T  23018050 caaaccgatgagatattagagaacatcattgatgaacataaaagggaaaagtacacaaaagtcaaaggtgatcaaggtgaggtagcagaagatctggtag 23017951  T
Q  117 acgttctgttaaattacgaggatggtagaaaccaagacctttccttgacaaaaaacaatatcaaggccataatcatggtaag 198  Q
    || |||| ||||| || |||||||||||  |||||||  | || || |||||| |||||||||||||||||||| |||||||    
T  23017950 acattctcttaaaatatgaggatggtagtgaccaagatttctcattaacaaaagacaatatcaaggccataatcttggtaag 23017869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 384 - 471
Target Start/End: Complemental strand, 23149184 - 23149097
Alignment:
Q  384 ttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaggaatccaagaataat 471  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||| | |||||||||||||    
T  23149184 ttcaggacatttttggtgctggaggcgagacatcagcaagcaccatagattgggcaatggtagagatggtaaaggatccaagaataat 23149097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 9 - 220
Target Start/End: Complemental strand, 23033655 - 23033451
Alignment:
Q  9 ttcatcggcaaactgatcagatattagaaaacatcatcaatgagcataaagaggaaaagtacacaaaagccaaagatgatcaaggtaaagtggaagaaga 108  Q
    ||||||| |||| |||| |||| || |||||||||||| ||||||||||| ||| |||||||||||| |||         |||||||| || | ||||||    
T  23033655 ttcatcgacaaaatgatgagatgtttgaaaacatcatcgatgagcataaaaaggcaaagtacacaaacgcc---------caaggtaaggtagtagaaga 23033565  T
Q  109 tctggtagacgttctgttaaattacgaggatggtagaaaccaagacctttccttgacaaaaaacaatatcaaggccataatcatggtaagcg-aattaac 207  Q
    |||||||||| |||| ||||| || |||||||||||  |||||||  | | ||| |||||| ||||||||||||| |||||| ||||||||| ||| |||    
T  23033564 tctggtagacattctcttaaaatatgaggatggtagtgaccaagatttcttcttaacaaaagacaatatcaaggctataatcttggtaagcgtaataaac 23033465  T
Q  208 t-ttccaaatactt 220  Q
    | ||||||||||||    
T  23033464 tcttccaaatactt 23033451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 198
Target Start/End: Complemental strand, 23149589 - 23149496
Alignment:
Q  105 aagatctggtagacgttctgttaaattacgaggatggtagaaaccaagacctttccttgacaaaaaacaatatcaaggccataatcatggtaag 198  Q
    ||||||||||||| |||||  |||| || || ||||| || ||| | ||  ||| |||||| ||| |||||||||||||||||||| |||||||    
T  23149589 aagatctggtagatgttctcataaaatatgaagatggcagcaacaaggaatttttcttgaccaaagacaatatcaaggccataatcttggtaag 23149496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 7e-53; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 17 - 232
Target Start/End: Complemental strand, 21780731 - 21780514
Alignment:
Q  17 caaactgatcagatattagaaaacatcatcaatgagcataaagaggaaaagtacacaaaagccaaagatgatcaaggtaaagtggaagaagatctggtag 116  Q
    ||||||||||||||||| |||||||||||||| || |||||||||| |||| |||||||| | ||||| ||| ||||| |||| ||||||||||| ||||    
T  21780731 caaactgatcagatatttgaaaacatcatcaaggaccataaagaggcaaagcacacaaaaccgaaagaagatgaaggtgaagtagaagaagatctcgtag 21780632  T
Q  117 acgttctgttaaattacgaggatggtagaaaccaagacctttccttgacaaaaaacaatatcaaggccataatcatggtaagcgaattaa-ct-ttccaa 214  Q
    ||||||| ||||| || ||||||||||| ||||  ||  ||||||| |||||| ||||||||||||||||||| ||||||||| |||||| || ||||||    
T  21780631 acgttctcttaaaatatgaggatggtagcaacctggatttttccttaacaaaagacaatatcaaggccataataatggtaagccaattaatctcttccaa 21780532  T
Q  215 atacttcgaagaagaaaa 232  Q
    ||||||||||||||||||    
T  21780531 atacttcgaagaagaaaa 21780514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 377 - 471
Target Start/End: Complemental strand, 21780246 - 21780152
Alignment:
Q  377 gctacttttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaggaatccaagaataat 471  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  21780246 gctacttttcaggacatgtttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatggtaagggatccaagaataat 21780152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 373 - 471
Target Start/End: Original strand, 6317 - 6415
Alignment:
Q  373 gatagctacttttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaggaatccaagaataat 471  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||| | |||||||||||    
T  6317 gatagctactttttaggacatttttggtgctggaggtgatacatcagcaaccaccatagattgggcaatggcagaaatgataagggagccaagaataat 6415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 9 - 199
Target Start/End: Original strand, 5714 - 5901
Alignment:
Q  9 ttcatcggcaaactgatcagatattagaaaacatcatcaatgagcataaagaggaaaagtacacaaaagccaaagatgatcaaggtaaagtggaagaaga 108  Q
    ||||||| ||||||||||| ||| | |||||||||||||||||||||||||| | ||  |||  ||||   ||||| ||| ||||| |||   |||||||    
T  5714 ttcatcgacaaactgatcaaatacttgaaaacatcatcaatgagcataaagaagcaagatacggaaaattaaaagaggatgaaggtgaag---aagaaga 5810  T
Q  109 tctggtagacgttctgttaaattacgaggatggtagaaaccaagacctttccttgacaaaaaacaatatcaaggccataatcatggtaagc 199  Q
    |||  |||||||||| ||||| || || |||||||| ||| | ||  ||||||| |||||| |||||||||| ||||| ||||||||||||    
T  5811 tctattagacgttctcttaaaatatgaagatggtagcaacaaggagttttccttaacaaaagacaatatcaaagccattatcatggtaagc 5901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 382 - 466
Target Start/End: Complemental strand, 12637426 - 12637342
Alignment:
Q  382 ttttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaggaatccaaga 466  Q
    ||||||||||||  |||||||||||||||| |||||| | |  ||||||| |||||||||||||||  | |||||| ||||||||    
T  12637426 ttttcaggacatcattggtgctggaggtgaaacatcatccactaccatagtttgggcaatggcagagttagtaagggatccaaga 12637342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 457
Target Start/End: Original strand, 15885531 - 15885609
Alignment:
Q  379 tacttttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaagg 457  Q
    ||||||||||||||| |||||||||||||| || |||||    | |||||||| |||||||||||||||  ||||||||    
T  15885531 tacttttcaggacatgtttggtgctggaggagatacatcgagtaccaccatagtttgggcaatggcagagttggtaagg 15885609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 466
Target Start/End: Complemental strand, 62581 - 62497
Alignment:
Q  382 ttttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaggaatccaaga 466  Q
    |||||||||||| ||||||||||||||||| ||||||||    | | ||| |||||||||||||||  |||||||  ||||||||    
T  62581 ttttcaggacatgtttggtgctggaggtgatacatcagctttgagcgtagtttgggcaatggcagagttggtaagagatccaaga 62497  T

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