View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1486_low_9 (Length: 416)
Name: NF1486_low_9
Description: NF1486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1486_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 52035765 - 52036167
Alignment:
| Q |
1 |
cgtatgagctatgatatacattgacgggagagaacttattatctgtgaagcttctacaatattagtatttgtcaacaaaataattcgaagtaattgacan |
100 |
Q |
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| T |
52035765 |
cgtatgagcgatgatatacattgtcgggagagaacttattatctgtgaagcttctacaatattagtatttgtaaacaaaataattcgaagtaattgatat |
52035864 |
T |
|
| Q |
101 |
nnnnnnataggtgttcttgcaagttgtttggataattgatgaaaagaatgaatgaaaaatgtaagaggatggaattgataaaccactcaatagattacat |
200 |
Q |
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| T |
52035865 |
ttttt-atacgtgttcttgcaagttgtttggataattgatgaaaagaatgaatgaaaaatgtaagaggatggaattgataaaccactcaatagattacat |
52035963 |
T |
|
| Q |
201 |
taaccattatttaaccgttttctgtgggaacaggggatgcctcaacattaggcaaggcaactactgttgttagtctgtttgagattctatacagcaagta |
300 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
52035964 |
taaccatt---taaccgttttctgtgggaacaggggatgcctcaacataaggcaaggcaactactgttgttagtctgtttgagattctatacaacaagta |
52036060 |
T |
|
| Q |
301 |
aacaataattgcgaatgctaattaagttcacaacaacgagcaattgcatttattccatttaataagaatctctattggtgttgcacaaattcactataca |
400 |
Q |
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| T |
52036061 |
aacaataattgcgaatgctaattaagttcacaacaacgaccaattgcatttattccatttaataagaatctctattggtgttgcacaaattcactataca |
52036160 |
T |
|
| Q |
401 |
caggttc |
407 |
Q |
| |
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||||||| |
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| T |
52036161 |
caggttc |
52036167 |
T |
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