View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14870_high_2 (Length: 466)
Name: NF14870_high_2
Description: NF14870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14870_high_2 |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 14 - 451
Target Start/End: Complemental strand, 43712839 - 43712402
Alignment:
| Q |
14 |
aagaaaaacacaatggaattnnnnnnnngtaaatcataccaggaaactgatagaagaacctattccaacacctaggaatcgacccagaaaagaatctgca |
113 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| ||| ||||||||||| |
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| T |
43712839 |
aagaaaaacacaatggaattaaaaaaaagtaaatcataccaggaaactgatagaagaacctattccgacacctaagaagcgaccaagataagaatctgca |
43712740 |
T |
|
| Q |
114 |
ataaaagcaccaatcacaggtgtgaaattgctagctgcagaggataaaagaagtatctgagtagatatgccaaggtgaagtctgtatgatcccattaaat |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43712739 |
ataaaagcaccaatcacaggtgtgaaattgctagctgcagaggataaaagaagtatctgagtagatatgccaaggtgaagtctgtatgatcccatcaaat |
43712640 |
T |
|
| Q |
214 |
acaatatcatgtttggtaataatcccacacttgccatcttagcaagtgcttcattccctgcaaataaaacaatcacaacagcaacaaaaccatattatac |
313 |
Q |
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||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43712639 |
acaatatcatgttgggtaatagtcccacacttgccatcttagcaagtgcttcattccctgcaaataaaacaatcacaacagcaacaaaaccatattatac |
43712540 |
T |
|
| Q |
314 |
gtaaaaattcaagctcattcaaagtnnnnnnnnnnnnnnnntgcatgcaaatcatagatattagataagataccaatgataaaaggcatggtgacaagac |
413 |
Q |
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| T |
43712539 |
gtaaaaattcaagctcattcaaagtaaaaataaaataaaaatgcatgcaaatcatagatattagataagataccaatgataaaaggcatggtgacaagac |
43712440 |
T |
|
| Q |
414 |
cacccttgcttctttgtggtttttgttgagaaaccatt |
451 |
Q |
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| T |
43712439 |
cacccttgcttctttgtggtttttgctgagaaaccatt |
43712402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 42 - 451
Target Start/End: Complemental strand, 43697888 - 43697502
Alignment:
| Q |
42 |
gtaaatcataccaggaaactgatagaagaacctattccaacacctaggaatcgacccagaaaagaatctgcaataaaagcaccaatcacaggtgtgaaat |
141 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43697888 |
gtaaatcataccaggaaactgatagaagaacctattccaacacctaggaatcgacccagaaaagaatctgcaataaaagcaccaatcacaggtgtgaaat |
43697789 |
T |
|
| Q |
142 |
tgctagctgcagaggataaaagaagtatctgagtagatatgccaaggtgaagtctgtatgatcccattaaatacaatatcatgtttggtaataatcccac |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
43697788 |
tgctagctgcagaggataaaagaagtatctgagtagatatgccaaggtgaagtctgtatgatcccatcaaatacaatatcatgtttggtaatagtcccaa |
43697689 |
T |
|
| Q |
242 |
acttgccatcttagcaagtgcttcattccctgcaaataaaacaatcacaacagcaacaaaaccatattatacgtaaaaattcaagctcattcaaagtnnn |
341 |
Q |
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|||||||||| |||||||||| ||||||||| ||| |||| |||||||||| ||| | | ||| ||||| | |||||||||||||||||||||| |
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| T |
43697688 |
acttgccatcctagcaagtgcctcattcccttcaatcaaaataatcacaaca-aaaccatattata-tatacatcaaaattcaagctcattcaaagt--- |
43697594 |
T |
|
| Q |
342 |
nnnnnnnnnnnnntgcatgcaaatcatagatattagataagataccaatgataaaaggcatggtgacaagaccacccttgcttctttgtggtttttgttg |
441 |
Q |
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| T |
43697593 |
--------aaaaatgcatgcaagtca-------tagataagataccaattataaaaggcatggtgataagaccacccttgcgtctttgtgg---ttgttg |
43697512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 48 - 268
Target Start/End: Complemental strand, 43726401 - 43726181
Alignment:
| Q |
48 |
cataccaggaaactgatagaagaacctattccaacacctaggaatcgacccagaaaagaatctgcaataaaagcaccaatcacaggtgtgaaattgctag |
147 |
Q |
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||||||||||| |||| | | ||||||| ||||||||| ||||| ||||| ||| |||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43726401 |
cataccaggaagctgacaaatgaacctaatccaacaccgaggaaccgaccgagataagaatctgcaataaaagcaccaaccacaggtgtgaaattgctag |
43726302 |
T |
|
| Q |
148 |
ctgcagaggataaaagaagtatctgagtagatatgccaaggtgaagtctgtatgatcccattaaatacaatatcatgtttggtaataatcccacacttgc |
247 |
Q |
| |
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||||||||||||| ||||| |||||||||| | || |||| ||||| ||||| |||||| |||||||||||||| || || |||| ||||| |||||| |
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| T |
43726301 |
ctgcagaggataagagaagaatctgagtagctttggcaagatgaagcctgtaacttcccatgaaatacaatatcatattgggcaatagtcccaaacttgc |
43726202 |
T |
|
| Q |
248 |
catcttagcaagtgcttcatt |
268 |
Q |
| |
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|||| | |||||||| ||||| |
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| T |
43726201 |
catccttgcaagtgcctcatt |
43726181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 50 - 268
Target Start/End: Complemental strand, 43685329 - 43685111
Alignment:
| Q |
50 |
taccaggaaactgatagaagaacctattccaacacctaggaatcgacccagaaaagaatctgcaataaaagcaccaatcacaggtgtgaaattgctagct |
149 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| | | |||||||||||||||||||| ||| | |||||||||||| | |||| |
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| T |
43685329 |
taccaggaaactgataatagaacctattccaacacctaggaatcgaccaatataagaatctgcaataaaagcagcaacaagaggtgtgaaatttccagct |
43685230 |
T |
|
| Q |
150 |
gcagaggataaaagaagtatctgagtagatatgccaaggtgaagtctgtatgatcccattaaatacaatatcatgtttggtaataatcccacacttgcca |
249 |
Q |
| |
|
|||||||||| ||||||||||| |||| | || |||| ||||| |||| || ||||| ||||||||||||||||| ||| |||||| |||||||| |
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| T |
43685229 |
gcagaggatatgagaagtatctgggtagctgtggcaagatgaagattgtaagaacccatcaaatacaatatcatgttaggtcctaatccagtacttgcca |
43685130 |
T |
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| Q |
250 |
tcttagcaagtgcttcatt |
268 |
Q |
| |
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|| |||||||||| ||||| |
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| T |
43685129 |
tcctagcaagtgcctcatt |
43685111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 355 - 451
Target Start/End: Complemental strand, 43685042 - 43684946
Alignment:
| Q |
355 |
tgcatgcaaatcatagatattagataagataccaatgataaaaggcatggtgacaagaccacccttgcttctttgtggtttttgttgagaaaccatt |
451 |
Q |
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|
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43685042 |
tgcatgcaagttatagatattagataagataccaatgataaaaggcatggtgacaagaccacccttgcttctttctggtttttgttgagaaaccatt |
43684946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 375 - 451
Target Start/End: Complemental strand, 43725962 - 43725889
Alignment:
| Q |
375 |
tagataagataccaatgataaaaggcatggtgacaagaccacccttgcttctttgtggtttttgttgagaaaccatt |
451 |
Q |
| |
|
||||||| | ||||||||| ||||||||||||| |||||||||||||| |||||| || |||||||||||||||| |
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|
| T |
43725962 |
tagataacagaccaatgatgaaaggcatggtgataagaccacccttgcgtctttgagg---ttgttgagaaaccatt |
43725889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 48 - 226
Target Start/End: Original strand, 26045 - 26223
Alignment:
| Q |
48 |
cataccaggaaactgatagaagaacctattccaacacctaggaatcgacccagaaaagaatctgcaataaaagcaccaatcacaggtgtgaaattgctag |
147 |
Q |
| |
|
|||||||||||||||| || |||||||| |||||||| || ||||||||||| | |||||||||||||||||||||||| |||||| |||| ||||| | |
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| T |
26045 |
cataccaggaaactgacagcagaacctaatccaacacttaagaatcgacccaaataagaatctgcaataaaagcaccaaccacaggcatgaacttgctgg |
26144 |
T |
|
| Q |
148 |
ctgcagaggataaaagaagtatctgagtagatatgccaaggtgaagtctgtatgatcccattaaatacaatatcatgtt |
226 |
Q |
| |
|
|||||| |||| || |||||||| ||| | |||||| ||||| |||| | |||||| ||||||||||||||||| |
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|
| T |
26145 |
ctgcagcaaataagaggagtatctggttagcttggccaagatgaaggttgtaaggtcccatcaaatacaatatcatgtt |
26223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 48 - 226
Target Start/End: Complemental strand, 25272186 - 25272008
Alignment:
| Q |
48 |
cataccaggaaactgatagaagaacctattccaacacctaggaatcgacccagaaaagaatctgcaataaaagcaccaatcacaggtgtgaaattgctag |
147 |
Q |
| |
|
|||||||||||||||| || |||||||| |||||||| || ||||| ||||| | |||||||||||| ||||||||||| |||||| |||| |||| | |
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| T |
25272186 |
cataccaggaaactgacagcagaacctaatccaacacttaagaatctacccaaataagaatctgcaacaaaagcaccaaccacaggcatgaacttgccgg |
25272087 |
T |
|
| Q |
148 |
ctgcagaggataaaagaagtatctgagtagatatgccaaggtgaagtctgtatgatcccattaaatacaatatcatgtt |
226 |
Q |
| |
|
|||||| ||||| || |||||||| ||| | |||||| ||||| |||| | |||||| ||||||||||||||||| |
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|
| T |
25272086 |
ctgcagcagataagaggagtatctggttagcttggccaagatgaaggttgtaaggtcccatcaaatacaatatcatgtt |
25272008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 375 - 434
Target Start/End: Complemental strand, 25270122 - 25270063
Alignment:
| Q |
375 |
tagataagataccaatgataaaaggcatggtgacaagaccacccttgcttctttgtggtt |
434 |
Q |
| |
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||||||| |||||||||| |||||||| |||| ||||||||||||||| |||||||||| |
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|
| T |
25270122 |
tagataacgtaccaatgatgaaaggcatagtgataagaccacccttgctcctttgtggtt |
25270063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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