View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14870_low_4 (Length: 382)
Name: NF14870_low_4
Description: NF14870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14870_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 20 - 246
Target Start/End: Original strand, 7132125 - 7132351
Alignment:
| Q |
20 |
aaggatacatgttaaggaatcaaatatataaatttatcttaaaaattgtgtatttaatactttggagtttataaaatgttcttttaaacccaaattctaa |
119 |
Q |
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| T |
7132125 |
aaggatacatgttaaggaatcgaatatataaatttatcttgaaaattgtgtatttaatactttggagtttataaaatgtacttttaaacccaaattctaa |
7132224 |
T |
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| Q |
120 |
gataaactttctatttttgattcattaacatgtgttcttagggtatttgttagcattgtcgtatttaaattggttttgaagttgtaaaattgatatatga |
219 |
Q |
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| T |
7132225 |
gataaagtttctatttttgattcattaacatgtgttcttagggtatttgttagcattgtcgtatttaaattggttttgaagttgtaaaattgatatatga |
7132324 |
T |
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| Q |
220 |
aagctatatacttttaagttacgaaaa |
246 |
Q |
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| T |
7132325 |
aagctatatacttttaagttacgaaaa |
7132351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 292 - 377
Target Start/End: Original strand, 7132359 - 7132444
Alignment:
| Q |
292 |
acattttgtatcaagaacttatttttcttataataacgttttggaacagccaacaagtaacatttgtgtttccttcctttgctact |
377 |
Q |
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| T |
7132359 |
acattttgtatcaagaacttatttttcttataataacgttttggaacagccaacaagtaacatttgtgtttccttcctttgttact |
7132444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 26 - 171
Target Start/End: Complemental strand, 44744654 - 44744509
Alignment:
| Q |
26 |
acatgttaaggaatcaaatatataaattt-atcttaaaaattgtgtatttaatactttggagtttataaaatgttcttttaaacccaaattctaagataa |
124 |
Q |
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| T |
44744654 |
acatgttaaggacgcaaagatagaaattttatcttggaaattgtgtatttaattctttgaagttta-aaattgttcttttaaacacaaattccaagataa |
44744556 |
T |
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| Q |
125 |
actttctatttttgattcattaacatgtgttcttagggtatttgtta |
171 |
Q |
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| T |
44744555 |
agtttctatctttggtttcttaacatgtgcccttagggcacttgtta |
44744509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 162
Target Start/End: Complemental strand, 38430166 - 38430029
Alignment:
| Q |
26 |
acatgttaaggaatcaaatatataaat-ttatcttaaaaattgtgtatttaatactttggagtttataaaatgttcttttaaacccaaattctaagataa |
124 |
Q |
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|||| |||||||| ||||||| |||| || |||| ||||||||||||||||| ||||| |||||| ||| | ||||||| ||| |||||| ||||||| |
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| T |
38430166 |
acatattaaggaaccaaatattgaaatattctcttgaaaattgtgtatttaattctttgaagtttaaaaattattcttttgaacataaattcgaagataa |
38430067 |
T |
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| Q |
125 |
actttctatttttgattcattaacatgtgttcttaggg |
162 |
Q |
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| T |
38430066 |
tatttctatctttggttccataacatgtgcccttaggg |
38430029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 86 - 147
Target Start/End: Complemental strand, 34390642 - 34390581
Alignment:
| Q |
86 |
gtttataaaatgttcttttaaacccaaattctaagataaactttctatttttgattcattaa |
147 |
Q |
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| T |
34390642 |
gtttaaaaattgttcttttaaacacaaattctaagataaattttttatctttgattccttaa |
34390581 |
T |
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