View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14871_high_1 (Length: 768)
Name: NF14871_high_1
Description: NF14871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14871_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 433; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 289 - 756
Target Start/End: Original strand, 12146102 - 12146566
Alignment:
| Q |
289 |
tatgctagctacttttgatctaacctaaacattcaaagtgcatgatactatatcaaaatatcacgagttacaaataataataattaattgttatatggta |
388 |
Q |
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| T |
12146102 |
tatgctagctacttttgatctaacctaaacattcaaagtgcatgatactat--caaactatcacgagttacaaataataataattaattgttatatggta |
12146199 |
T |
|
| Q |
389 |
aaacttatttatgaatagacttaattaccatcttggttgtcaagattcttgtccaagtctttgggtgcagtctcagcagaactgagaaggatggaagcca |
488 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12146200 |
aaacttaattatgaatagacttaattaccatcttggttgtcaagattcttgtccaagtctttgggtgcagtctcagcagaactgagaaggatggaagcca |
12146299 |
T |
|
| Q |
489 |
acaacatagctagaaaaagtaaagccttggaattcatttttgctaacacaatgtgaaaactttatctattttatacgtatggatggatgaaaaggatgtg |
588 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12146300 |
acaacatagctagaaaaagtaaagccttggaattcatttttgctaacacaatgtgaaaactttatctattttatacgtatggatggatgaaaaggatgtg |
12146399 |
T |
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| Q |
589 |
actaaatgttgttgtatttatagtcaaggtgagcaagaaatagaacaagctagagcatacaatatttgactttgaattaattcattcttatctttaacaa |
688 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
12146400 |
actaaatgttgttgtatttatagtcaaggtgagcaagaaatagaacaagctagagcatacaatatttgacttcgaattaattcattcttatctttaacaa |
12146499 |
T |
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| Q |
689 |
aatgctgtaatgcaaaaataatgatcattgatattttacacacttatgtcaatctgccctttgcttct |
756 |
Q |
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| T |
12146500 |
aatgctgtaatgcaaaaataatgatcattgata-tttacacacttatgtcaatctgccctttgattct |
12146566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 21 - 267
Target Start/End: Original strand, 12145857 - 12146103
Alignment:
| Q |
21 |
cgaggatagcagcaccttctacagcttccatggtagccccaatcacagcaaccgtgatggcaatatcgtccgccgtaatgtcctccgccgtaaccacctc |
120 |
Q |
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| T |
12145857 |
cgaggatagcagcaccttctacagcttccatggtagccccaatcacagcaaccgtgatgacaatatcttccgccgtaatgtcctccaccgtaaccacctc |
12145956 |
T |
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| Q |
121 |
caccataaccacttccaccaccacgccatggaccgcctacatattggctttcatctaccccatttgtttcatagaactctacagatattaaaaaacaaaa |
220 |
Q |
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| T |
12145957 |
caccataaccacttccaccaccacgccatggaccgcctacatattggctttcatctaccccatttgtttcatagaactctacaaatattgaaaaacaaaa |
12146056 |
T |
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| Q |
221 |
catatgattactagagattaaaatataaggtttacacatatatttta |
267 |
Q |
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| T |
12146057 |
catatgattactagaaattaaaatataaggtttacacatatatttta |
12146103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 437 - 528
Target Start/End: Complemental strand, 12149561 - 12149470
Alignment:
| Q |
437 |
ttgtccaagtctttgggtgcagtctcagcagaactgagaaggatggaagccaacaacatagctagaaaaagtaaagccttggaattcatttt |
528 |
Q |
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| T |
12149561 |
ttgtccaagtctttgggtgcagactctgcacaaatgagaaggatggaagccaacaacatggctagaaaaagtaacgccttggaattcatttt |
12149470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 437 - 529
Target Start/End: Complemental strand, 12164045 - 12163953
Alignment:
| Q |
437 |
ttgtccaagtctttgggtgcagtctcagcagaactgagaaggatggaagccaacaacatagctagaaaaagtaaagccttggaattcattttt |
529 |
Q |
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| T |
12164045 |
ttgtccaagtctttgggtgcagactctgcacatataagaaggatggtagccaacagcatggctaggaaaagtaaagcctttgaattcattttt |
12163953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 459 - 528
Target Start/End: Complemental strand, 12182365 - 12182296
Alignment:
| Q |
459 |
tctcagcagaactgagaaggatggaagccaacaacatagctagaaaaagtaaagccttggaattcatttt |
528 |
Q |
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| T |
12182365 |
tctcagcagagatgagaaggatggaagccagcaacatagtaagaaaaagtaaccctttggaattcatttt |
12182296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 459 - 528
Target Start/End: Complemental strand, 12188370 - 12188301
Alignment:
| Q |
459 |
tctcagcagaactgagaaggatggaagccaacaacatagctagaaaaagtaaagccttggaattcatttt |
528 |
Q |
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| T |
12188370 |
tctcagcagagatgagaaggatggaagccagcaacatagtaagaaaaagtaaccctttggaattcatttt |
12188301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 471 - 528
Target Start/End: Complemental strand, 12175386 - 12175329
Alignment:
| Q |
471 |
tgagaaggatggaagccaacaacatagctagaaaaagtaaagccttggaattcatttt |
528 |
Q |
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||||||| ||||||||||| | |||||||||||||||||| | |||||||||||||| |
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| T |
12175386 |
tgagaagaatggaagccaagagcatagctagaaaaagtaaccctttggaattcatttt |
12175329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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