View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14871_high_20 (Length: 304)
Name: NF14871_high_20
Description: NF14871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14871_high_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 185 - 266
Target Start/End: Original strand, 52117627 - 52117708
Alignment:
| Q |
185 |
gtgagatggtttgtagcatttgagtgataaaatgcaagagtgctacttaaaaaaagtcaatacgagagaaacaagagtgaag |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52117627 |
gtgagatggtttgtagcatttgagtgataaaatgcaagagtgctacttaaaaaaagtcaatacgagagaaacaagagtgaag |
52117708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 52117453 - 52117526
Alignment:
| Q |
12 |
atgtgtttcatccaaaaattaaacttgagttctcctcaacgatttatcttggttgagtaatttgattaattgtg |
85 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
52117453 |
atgtgtttcatccaaaaattgaacttcagttctcctcaaagatttatcttggttgagtaatttgattaattgtg |
52117526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University