View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14871_high_21 (Length: 291)
Name: NF14871_high_21
Description: NF14871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14871_high_21 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 15 - 275
Target Start/End: Original strand, 3805932 - 3806192
Alignment:
| Q |
15 |
atgaacacatgcacttgtggtctgggtatgaaaagcacagcacaatttgcccaaataattgataattgaaagaaagaaaaaatactaagaagagaacaga |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
3805932 |
atgaacacatgcacttgtggtctgggtatgaaaagcacagaacaatttgcccaaataattgataagtgaaagaaagaaaaaatactaagaagagaacaga |
3806031 |
T |
|
| Q |
115 |
ttctgcttannnnnnngaagtatgtgctcttttttataaagtctaaagtcaaaactgcatccctatttttatgtaacagaactatcacaactcatcacat |
214 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
3806032 |
ttctgcttatttttttgaagtatgtgctcttttttataaagtctaaagtcaaaactgcatccctattttcatgcaacagaactatcacaactcatcacat |
3806131 |
T |
|
| Q |
215 |
attaaaatgagacctaataataaggagttgccaaactgattggaaacaaataataagcatt |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3806132 |
attaaaatgagacctaataataaggagttgccaaactgattggaaacaaataataagcatt |
3806192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University