View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14871_high_23 (Length: 277)
Name: NF14871_high_23
Description: NF14871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14871_high_23 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 266
Target Start/End: Complemental strand, 33698408 - 33698158
Alignment:
| Q |
20 |
gatttggtagtacttacttgtgttgaggaatnnnnnnnttaaagtgataaagaggttgaaaattcaatatttacatttcacacccttaacataatacttc |
119 |
Q |
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| T |
33698408 |
gatttggtagtacttacttgtgttgaggaataaaaaaattatagtgataaagaggttgaaaattcaatatttacatttcacacccttaacataatacttc |
33698309 |
T |
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| Q |
120 |
taatagt----attaaaaagatatatgtctggacatagtttaaatacatatgtctggcctggacatagtttaaagagttgttgcattgcaatttggcact |
215 |
Q |
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| T |
33698308 |
taatatttactattaaaaagaaatatgtctggacatagtttaaatacatatgtctggcctggacatagtttaaagagttgttgcattgcaatttggcact |
33698209 |
T |
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| Q |
216 |
atcaattatttagtactttttcattaattaaacctttcccatattcttcga |
266 |
Q |
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| T |
33698208 |
atcaattatttagcactttttcattaattaaacctttcccattttcttcga |
33698158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 33689936 - 33689873
Alignment:
| Q |
20 |
gatttggtagtacttacttgtgttgaggaatnnnnnnnttaaagtgataaagaggttgaaaatt |
83 |
Q |
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| T |
33689936 |
gatttggtagtacttaattgtgttgtggaatttaaaaattatagtgataaagaggttgaaaatt |
33689873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 30 - 159
Target Start/End: Original strand, 82650 - 82776
Alignment:
| Q |
30 |
tacttacttgtgttgaggaatnnnnnnnttaaagtgataaagaggttgaaaattcaatatttacatttcacacccttaacataatacttctaa----tag |
125 |
Q |
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| T |
82650 |
tacttacttgtgttgaggaattaaaaaattatagtgataaagagattgaaaattcgatatt-------cacaccctttacatagtacttctaacatctac |
82742 |
T |
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| Q |
126 |
tattaaaaagatatatgtctggacatagtttaaa |
159 |
Q |
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| T |
82743 |
tattaaaaagaaatatgtctggacatagtttaaa |
82776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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