View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14871_high_8 (Length: 414)
Name: NF14871_high_8
Description: NF14871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14871_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 397; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 40617243 - 40616835
Alignment:
| Q |
1 |
ttctcagtgcgatgagatattccatagcaactcagaaagaatcgtggcattatcgactggatggtacagtggagggtcaaggtgtggaaaatttattaga |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
40617243 |
ttctcagtgcgatgagatattccatagcaactcggaaagaatcgtggcattatcgactggatggtacagtggaggttcaaggtgtggaaaatttattaga |
40617144 |
T |
|
| Q |
101 |
attagggcgtcgaacgggaggactgtgaccgcgaaagtggtagaccaatgtgattcagtgaatggatgtgatgatgaacatgcaggtcagccaccttgtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40617143 |
attagggcgtcgaacgggaggactgtgaccgcgaaagtggtagaccaatgtgattcagtgaatggatgtgatgatgaacatgcaggtcagccaccttgtc |
40617044 |
T |
|
| Q |
201 |
gtaacaatattgtggatggatctgcagctgtgtgggatgaattacggctgaataaaaatgatggtgtagtaccagttacatggactatggcttgaaagaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40617043 |
gtaacaatattgtggatggatctgcagctgtgtgggatgaattacggctgaataaaaatgatggtgtagtaccagttacatggactatggcttgaaagaa |
40616944 |
T |
|
| Q |
301 |
tactcaagtagtggctaatatatataattaataagactaagcttaatttgcataaggtaaaattaagcttgtgtgtgttatttcgtcattttgttggtcc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40616943 |
tactcaagtagtggctaatatatataattaataagactaagcttaatttgcataaggtaaaattaagcttgtgtgtgttatttcgtcattttgttggtcc |
40616844 |
T |
|
| Q |
401 |
tttgcttct |
409 |
Q |
| |
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|||| |||| |
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| T |
40616843 |
tttgtttct |
40616835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 28 - 310
Target Start/End: Complemental strand, 40627927 - 40627646
Alignment:
| Q |
28 |
caactcagaaagaatcgtggcattatcgactggatggtacagtggagggtcaaggtgtggaaaatttattagaattagggcgtcgaacgggaggactgtg |
127 |
Q |
| |
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|||||| |||||| | ||||| || || ||||| ||||||| ||||| ||||| ||||||||| | |||||||| | |||| ||||||||||| |||| |
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| T |
40627927 |
caactcggaaagagtggtggctttgtccactgggtggtacaacggaggttcaagatgtggaaaaatgattagaatcacggcgaggaacgggaggagtgtg |
40627828 |
T |
|
| Q |
128 |
accgcgaaagtggtagaccaatgtgattcagtgaatggatgtgatgatgaacatgcaggtcagccaccttgtcgtaacaatattgtggatggatctgcag |
227 |
Q |
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|| ||||||||||| ||||| |||||||| ||||||||||||||| | ||||| ||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
40627827 |
acggcgaaagtggtggaccagtgtgattcggtgaatggatgtgataaggaacacgcaggtcagccaccttgtcataacaatattgtggatggatctgtat |
40627728 |
T |
|
| Q |
228 |
ctgtgtgggatgaattacggctgaataaaaatgatggtgtagtaccagttacatggactatggcttgaaagaatactcaagta |
310 |
Q |
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| T |
40627727 |
ctgtgtggaatgcattagggttgaatacagatgatggtgtagtaccagttacatggtctatggctt-aaaaattactcaagta |
40627646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 116 - 296
Target Start/End: Complemental strand, 40610633 - 40610453
Alignment:
| Q |
116 |
gggaggactgtgaccgcgaaagtggtagaccaatgtgattcagtgaatggatgtgatgatgaacatgcaggtcagccaccttgtcgtaacaatattgtgg |
215 |
Q |
| |
|
||||||| |||||| ||||| ||||| || ||||||||||||||||||| |||||||| || |||||| | |||||||||||||||||||||||||||| |
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| T |
40610633 |
gggaggagtgtgacggcgaaggtggtggatgaatgtgattcagtgaatggttgtgatgaggagcatgcatggcagccaccttgtcgtaacaatattgtgg |
40610534 |
T |
|
| Q |
216 |
atggatctgcagctgtgtgggatgaattacggctgaataaaaatgatggtgtagtaccagttacatggactatggcttgaa |
296 |
Q |
| |
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||||||||| |||||||||| ||| |||| || | |||| |||||||||| ||||||||||||||| |||| ||||||| |
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| T |
40610533 |
atggatctgtagctgtgtggaatgcattagggttaaatactgatgatggtgtggtaccagttacatggtctatagcttgaa |
40610453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 371
Target Start/End: Complemental strand, 40610406 - 40610364
Alignment:
| Q |
329 |
taataagactaagcttaatttgcataaggtaaaattaagcttg |
371 |
Q |
| |
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|||||||| |||||||||||||||||||| |||||||||||| |
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| T |
40610406 |
taataagaacaagcttaatttgcataaggttaaattaagcttg |
40610364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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