View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14871_low_13 (Length: 395)
Name: NF14871_low_13
Description: NF14871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14871_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 11 - 378
Target Start/End: Original strand, 40660096 - 40660463
Alignment:
| Q |
11 |
agagaagaagaaggtcgaccttggaatttacacttgaagtccttggaaaataacataaatctcacagaaatgtatttgctgggaagattgagcagttcat |
110 |
Q |
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| T |
40660096 |
agagatgaagaaggtcgaccttggaatttacacttgaagtccttggaaaataacataaatctcacagacatgtatttgctgggaagattgagcagttcat |
40660195 |
T |
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| Q |
111 |
ctattctgtctcaattccctctgagcctcgttgaacttaccctatcacattcggaactagaggatgatcccatgatacttttgaaagattttccacatct |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40660196 |
ctattctgtctcaattccctctgagcctcgttgaacttaccctatcacattcggaactagaggatgatcccatgatacttttgaaagattttccacatct |
40660295 |
T |
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| Q |
211 |
tcgaacactgtgtttactcgcagagtcatacgtgggcacaactgtggtttgcgaatctcaaagctttcctcagcttcatgtcttaaaattttggaagctg |
310 |
Q |
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| T |
40660296 |
tcgaacactgtgtttactcgcagagtcatacgtgggcacaactgtggtttgcgaatctcaaagctttcctcagcttcatgtcttaaaattttggaagctg |
40660395 |
T |
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| Q |
311 |
cagcatttggaggaaattaagatagatccaggagcactcccatgtctaagacaactggaaatcagatc |
378 |
Q |
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| T |
40660396 |
cagcatttggaggaaattaagatagatccaggagcactcccatgtctaagacaactggaaatcagatc |
40660463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 377
Target Start/End: Original strand, 40639331 - 40639697
Alignment:
| Q |
11 |
agagaagaagaaggtcgaccttggaatttacacttgaagtccttggaaaataacataaatctcacagaaatgtatttgctgggaagattgagcagttcat |
110 |
Q |
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| T |
40639331 |
agagatgaagaagggaaaccttggattttacctttgaagtccttcgagaaaaatgaaaatctcactgacatgtatttactagggagtttgagtaggtcat |
40639430 |
T |
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| Q |
111 |
ctattctgtctcaattccctctgagcctcgttgaacttaccctatcacattcggaactagaggatgatcccatgatacttttgaaagattttccacatct |
210 |
Q |
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||||| |||| ||||| || |||||||||||||||||||| |||||||| ||||| |||| || ||||||| |||||||||| | ||| || | || |
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| T |
40639431 |
ctattgtgtcccaatttccgaaaagcctcgttgaacttaccctgtcacattcaaaactaaaggaagaccccatgaaacttttgaaatacttttcagagct |
40639530 |
T |
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| Q |
211 |
tcgaacactgtgtttactcgcagagtcatacgtgggcaca-actgtggtttgcgaatctcaaagctttcctcagcttcatgtcttaaaattttggaagct |
309 |
Q |
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| T |
40639531 |
tcggatactgtgtttactcgcagactcttacatggg-acatactatggtttgcgaatctcaaagctttcctaagcttcatgcgttaaaattttgggtgct |
40639629 |
T |
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| Q |
310 |
gcagcatttggaggaaattaagatagatccaggagcactcccatgtctaagacaactggaaatcagat |
377 |
Q |
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| T |
40639630 |
gaagcaattagaggaatggaaaatagagcaaggagcacttccctgtctgagacaactggaaatcagat |
40639697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 28 - 382
Target Start/End: Complemental strand, 40625946 - 40625592
Alignment:
| Q |
28 |
accttggaatttacacttgaagtccttggaaaataacataaatctcacagaaatgtatttgctgggaagattgagcagttcatctattctgtctcaattc |
127 |
Q |
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|||||||| |||| ||||| ||||||| | ||||| |||||||||| || |||||||| || |||||||| |||||||||||||| ||||| ||||| |
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| T |
40625946 |
accttggattttatacttgcagtccttcaagaataatgtaaatctcactgacatgtatttactaggaagatttagcagttcatctatcctgtcccaattt |
40625847 |
T |
|
| Q |
128 |
cctctgagcctcgttgaacttaccctatcacattcggaactagaggatgatcccatgatacttttgaaagattttccacatcttcgaacactgtgtttac |
227 |
Q |
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|| ||||| ||||| |||||||| |||||||| |||||||||| || |||||| |||||||||||| || || ||||||| | ||| | | | | |
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| T |
40625846 |
ccgaaaagccttgttgagcttaccctgtcacattccaaactagaggaggaccccatgcaacttttgaaagaattatcaaatcttcggatactatctctgc |
40625747 |
T |
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| Q |
228 |
tcgcagagtcatacgtgggcacaactgtggtttgcgaatctcaaagctttcctcagcttcatgtcttaaaattttggaagctgcagcatttggaggaaat |
327 |
Q |
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| T |
40625746 |
tggcagactcttacataggacaaaccatgttttgccaatctcaaatctttcctcagcttcatgtattaaaattttggaatctgcagcattttgatgaatg |
40625647 |
T |
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| Q |
328 |
taagatagatccaggagcactcccatgtctaagacaactggaaatcagatcatgt |
382 |
Q |
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| T |
40625646 |
gactatagagccaggagcactcccgtgtctcagacaactcgaaatcagatcatgt |
40625592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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