View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14871_low_14 (Length: 367)
Name: NF14871_low_14
Description: NF14871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14871_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 20 - 352
Target Start/End: Complemental strand, 44685076 - 44684735
Alignment:
| Q |
20 |
atgccaatttggatgcaataattgctcgctatgcggagactataaacaagtacaacttacgtaacttaggtagggttttggtgcttcatttttctatctt |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
44685076 |
atgccaatttggatgcaataattgctcgctatgcggagactataaacaagtacaacttacgtaacttaggtagggttttggtgcttcatttttctatatt |
44684977 |
T |
|
| Q |
120 |
tagttattaagttatctaaac-aaaacnnnnnnnnntcattttcttcttcattaaatttttcattctattcactagatccgtatggtatattgttttcct |
218 |
Q |
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| T |
44684976 |
tagttattaagttatctaaacaaaaaaaaaaaaaaatcattttcttcttcattaaatttttcattctattcactagatccgtatggtatattgttttcct |
44684877 |
T |
|
| Q |
219 |
tggatgtttaaattctttgatacctatctaaaacaattcacctac--------nnnnnnnnnatgagcataaactattgttcacttactaacgtcnnnnn |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
44684876 |
tggatgtttaaattctttgatacctatctaaaacaattcacctactttttttttttttttttatgagcataaactattcttcacttactaacgtcaaaaa |
44684777 |
T |
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| Q |
311 |
nntgatattgaaggctaccccactaatcaagacttcaactac |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
44684776 |
aatgatattgaaggctaccccactaatcaagacttcaactac |
44684735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 20 - 122
Target Start/End: Complemental strand, 44662662 - 44662558
Alignment:
| Q |
20 |
atgccaatttggatgcaataattgctcgctatgcggagactataaacaagtacaacttacgtaacttaggtagggttttggtgcttc--atttttctatc |
117 |
Q |
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| T |
44662662 |
atgccaatttggatgcaataattgctcactatgctcagactataaccaagtacaacatgcgtaacttaggtaggcttttggtgcttcatatttttctatc |
44662563 |
T |
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| Q |
118 |
tttag |
122 |
Q |
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||||| |
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| T |
44662562 |
tttag |
44662558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 351
Target Start/End: Complemental strand, 44661671 - 44661633
Alignment:
| Q |
313 |
tgatattgaaggctaccccactaatcaagacttcaacta |
351 |
Q |
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||||||||||||||| ||||| ||||||||||||||||| |
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| T |
44661671 |
tgatattgaaggctatcccacaaatcaagacttcaacta |
44661633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 29339643 - 29339750
Alignment:
| Q |
20 |
atgccaatttggatgcaataattgctcgctatgcggagactataaacaagtacaacttacgtaacttaggtagggttttggtgcttcatttttctatctt |
119 |
Q |
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|
|||||||||| |||||| ||||| ||| ||||| |||||||||||||||||||||||| || ||||||||| || ||||| ||||| ||||||||||||| |
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| T |
29339643 |
atgccaatttagatgcagtaattactcactatgtggagactataaacaagtacaacttgcgcaacttaggtgggtttttgatgcttgatttttctatctt |
29339742 |
T |
|
| Q |
120 |
tagttatt |
127 |
Q |
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||| |||| |
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| T |
29339743 |
tagatatt |
29339750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 114
Target Start/End: Original strand, 29352805 - 29352899
Alignment:
| Q |
20 |
atgccaatttggatgcaataattgctcgctatgcggagactataaacaagtacaacttacgtaacttaggtagggttttggtgcttcatttttct |
114 |
Q |
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|||||||||| |||||| ||||||||| ||||| ||||||||||||||| |||||||| |||||||||||||| ||||| ||||| |||||||| |
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| T |
29352805 |
atgccaatttagatgcagtaattgctcactatgtggagactataaacaaatacaacttgtgtaacttaggtaggtttttgatgcttgatttttct |
29352899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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