View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14871_low_15 (Length: 366)

Name: NF14871_low_15
Description: NF14871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14871_low_15
NF14871_low_15
[»] chr6 (28 HSPs)
chr6 (1-168)||(26862014-26862185)
chr6 (210-344)||(26861840-26861975)
chr6 (220-337)||(26884399-26884516)
chr6 (233-344)||(26802669-26802780)
chr6 (233-344)||(27718228-27718339)
chr6 (227-338)||(28786511-28786622)
chr6 (227-338)||(28792632-28792743)
chr6 (227-337)||(28781373-28781483)
chr6 (233-344)||(27610851-27610962)
chr6 (233-344)||(27592869-27592980)
chr6 (233-344)||(27604554-27604665)
chr6 (233-344)||(27698343-27698454)
chr6 (233-344)||(27706251-27706362)
chr6 (233-344)||(27677463-27677574)
chr6 (233-343)||(27214648-27214758)
chr6 (233-343)||(27234470-27234580)
chr6 (233-344)||(27679173-27679284)
chr6 (220-274)||(26646776-26646830)
chr6 (220-274)||(26752744-26752798)
chr6 (220-342)||(27337901-27338023)
chr6 (220-342)||(27398641-27398763)
chr6 (220-342)||(26656218-26656340)
chr6 (220-342)||(26762189-26762311)
chr6 (254-344)||(27427476-27427566)
chr6 (252-338)||(27531065-27531151)
chr6 (219-311)||(28325737-28325829)
chr6 (220-309)||(28297549-28297638)
chr6 (220-309)||(28514435-28514524)
[»] scaffold0277 (2 HSPs)
scaffold0277 (227-344)||(4514-4631)
scaffold0277 (227-337)||(13475-13585)
[»] scaffold0349 (2 HSPs)
scaffold0349 (233-344)||(14205-14316)
scaffold0349 (233-344)||(3269-3381)
[»] scaffold0419 (1 HSPs)
scaffold0419 (227-337)||(7759-7869)
[»] chr4 (6 HSPs)
chr4 (227-267)||(18679397-18679437)
chr4 (227-267)||(18723915-18723955)
chr4 (254-344)||(18073989-18074079)
chr4 (227-267)||(18655307-18655347)
chr4 (227-267)||(18699230-18699270)
chr4 (227-267)||(18731334-18731374)
[»] scaffold0003 (1 HSPs)
scaffold0003 (254-344)||(59797-59887)
[»] scaffold0038 (1 HSPs)
scaffold0038 (219-311)||(117052-117144)
[»] chr1 (2 HSPs)
chr1 (225-269)||(28127507-28127551)
chr1 (226-269)||(28164192-28164235)
[»] chr2 (1 HSPs)
chr2 (225-307)||(3279967-3280049)


Alignment Details
Target: chr6 (Bit Score: 143; Significance: 5e-75; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 26862185 - 26862014
Alignment:
Q  1 tcttcccaataaactcatattcacatctattcacgtccaataagtttaattagtacacacactacaatcacgatcacatcattat----ttacaacaaca 96  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||| |    
T  26862185 tcttcccaataaactcatattcatatctattcacgtccaataagtttaattagtacacacactacaatcacgatcacatcattatttaattacaacaaaa 26862086  T
Q  97 aaaattaatacttgtttgggaatataaataaaaatgtggttttcgatttaactttaaagatgagattactct 168  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  26862085 aaaattaatacttgtttgggaatataaataaaaatgtggttttctatttaactttaaagatgagattactct 26862014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 210 - 344
Target Start/End: Complemental strand, 26861975 - 26861840
Alignment:
Q  210 ggatttatgt-aagtggggtacccaggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgtta 308  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  26861975 ggatttatgttaagtggggtacccaggactaaaatggtagcctgacaagttagcagcttggttcagagcaactttccatctctgcaacctctccatgtta 26861876  T
Q  309 tccatttcattttgaaaccttttttcatgcttagcc 344  Q
    ||||| ||||||||||||||||||||||||||||||    
T  26861875 tccatatcattttgaaaccttttttcatgcttagcc 26861840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 220 - 337
Target Start/End: Complemental strand, 26884516 - 26884399
Alignment:
Q  220 aagtggggtacccaggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcatt 319  Q
    ||||||| |||||| |||||||||||||||| |||||||||||| ||||  |||  || | |||||||| |||||||||||||||||||||| | |||||    
T  26884516 aagtgggatacccaagactaaaatggtagccggacaagttagcaacttgcctcatagccattttccatcgctgcaacctctccatgttatccttatcatt 26884417  T
Q  320 ttgaaaccttttttcatg 337  Q
    ||||||||||||||||||    
T  26884416 ttgaaaccttttttcatg 26884399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 233 - 344
Target Start/End: Complemental strand, 26802780 - 26802669
Alignment:
Q  233 aggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcattttgaaaccttttt 332  Q
    |||||||  ||||||||| |||||||||||||| ||| |||| || |||||||||| || ||||||||||||||||||| | ||||||||||||||||||    
T  26802780 aggactatcatggtagccggacaagttagcagcctggctcagagccactttccatcgctccaacctctccatgttatccttatcattttgaaaccttttt 26802681  T
Q  333 tcatgcttagcc 344  Q
    ||||||| ||||    
T  26802680 tcatgctcagcc 26802669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 233 - 344
Target Start/End: Original strand, 27718228 - 27718339
Alignment:
Q  233 aggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcattttgaaaccttttt 332  Q
    |||||||  ||||||||| |||||||||||||| ||| |||| || |||||||||| |||||||||||||||||||| | | |||||||||||||| |||    
T  27718228 aggactatcatggtagccggacaagttagcagcctggctcagagccactttccatcgctgcaacctctccatgttattcttatcattttgaaacctcttt 27718327  T
Q  333 tcatgcttagcc 344  Q
    ||||||| ||||    
T  27718328 tcatgctcagcc 27718339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 227 - 338
Target Start/End: Complemental strand, 28786622 - 28786511
Alignment:
Q  227 gtacccaggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcattttgaaac 326  Q
    ||||||||||||| |||||||||| |||||||||||||||||| |||| || |  ||||||   ||||||||||||||||||||| | ||||||||||||    
T  28786622 gtacccaggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatccttatcattttgaaac 28786523  T
Q  327 cttttttcatgc 338  Q
    || |||||||||    
T  28786522 ctcttttcatgc 28786511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 227 - 338
Target Start/End: Complemental strand, 28792743 - 28792632
Alignment:
Q  227 gtacccaggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcattttgaaac 326  Q
    ||||||||||||| |||||||||| |||||||||||||||||| |||| || |  ||||||   ||||||||||||||||||||| | ||||||||||||    
T  28792743 gtacccaggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatccttatcattttgaaac 28792644  T
Q  327 cttttttcatgc 338  Q
    || |||||||||    
T  28792643 ctcttttcatgc 28792632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 227 - 337
Target Start/End: Complemental strand, 28781483 - 28781373
Alignment:
Q  227 gtacccaggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcattttgaaac 326  Q
    ||||||||||||| |||||||||| |||||||||||||||||| |||| || |  ||||||   ||||||||||||||||||||| | ||||||||||||    
T  28781483 gtacccaggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatccttatcattttgaaac 28781384  T
Q  327 cttttttcatg 337  Q
    || ||||||||    
T  28781383 ctcttttcatg 28781373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 233 - 344
Target Start/End: Original strand, 27610851 - 27610962
Alignment:
Q  233 aggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcattttgaaaccttttt 332  Q
    |||||||  ||||||||| || ||||| ||||| ||| |||| || |||||||||| |||||||||||||||||||| | | |||||||||||||| |||    
T  27610851 aggactatcatggtagccggaaaagtttgcagcctggctcagagccactttccatccctgcaacctctccatgttattcttatcattttgaaacctcttt 27610950  T
Q  333 tcatgcttagcc 344  Q
    ||||||| ||||    
T  27610951 tcatgctcagcc 27610962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 233 - 344
Target Start/End: Original strand, 27592869 - 27592980
Alignment:
Q  233 aggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcattttgaaaccttttt 332  Q
    |||||||  ||||||||| |||||||||||||| ||| |||| ||  ||||||||| |||||||||||||||||| | |   |||||||||||||| |||    
T  27592869 aggactatcatggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatgtttttcggatcattttgaaacctcttt 27592968  T
Q  333 tcatgcttagcc 344  Q
    ||||||| ||||    
T  27592969 tcatgctcagcc 27592980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 233 - 344
Target Start/End: Original strand, 27604554 - 27604665
Alignment:
Q  233 aggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcattttgaaaccttttt 332  Q
    |||||||  ||||||||| || ||||||||||| ||| |||| || |||||||||| |||||||||||  |||||||||   ||||||||||||||||||    
T  27604554 aggactatcatggtagccggaaaagttagcagcctggctcagagccactttccatcgctgcaacctctttatgttatcctcatcattttgaaaccttttt 27604653  T
Q  333 tcatgcttagcc 344  Q
    | ||||| ||||    
T  27604654 ttatgctcagcc 27604665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 233 - 344
Target Start/End: Original strand, 27698343 - 27698454
Alignment:
Q  233 aggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcattttgaaaccttttt 332  Q
    |||||||  ||||||||| |||||||||||||| ||| |||| ||  ||||||||| |||||||||||||||||| | |   |||||||||||||| |||    
T  27698343 aggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatccctgcaacctctccatgtttttcggatcattttgaaacctcttt 27698442  T
Q  333 tcatgcttagcc 344  Q
    ||||||| ||||    
T  27698443 tcatgctcagcc 27698454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 233 - 344
Target Start/End: Original strand, 27706251 - 27706362
Alignment:
Q  233 aggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcattttgaaaccttttt 332  Q
    |||||||  ||||||||| |||||||||||||| ||| |||| ||  ||||||||| |||||||||||||||||| | |   |||||||||||||| |||    
T  27706251 aggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatccctgcaacctctccatgtttttcggatcattttgaaacctcttt 27706350  T
Q  333 tcatgcttagcc 344  Q
    ||||||| ||||    
T  27706351 tcatgctcagcc 27706362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 233 - 344
Target Start/End: Original strand, 27677463 - 27677574
Alignment:
Q  233 aggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcattttgaaaccttttt 332  Q
    |||||||  ||||||||| |||||||||||||| ||| |||| ||  ||||||||| |||||||||||||||| | | |   |||||||||||||| |||    
T  27677463 aggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatccctgcaacctctccatgcttttcggatcattttgaaacctcttt 27677562  T
Q  333 tcatgcttagcc 344  Q
    ||||||| ||||    
T  27677563 tcatgctcagcc 27677574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 343
Target Start/End: Complemental strand, 27214758 - 27214648
Alignment:
Q  233 aggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcattttgaaaccttttt 332  Q
    ||||||| |||| ||||| || ||||||||||||||||| || || |  |||||| ||||||||| ||||||||| ||| | | |||||||||||| | |    
T  27214758 aggactataatgatagccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttgaaacctctct 27214659  T
Q  333 tcatgcttagc 343  Q
    |||||||||||    
T  27214658 tcatgcttagc 27214648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 343
Target Start/End: Original strand, 27234470 - 27234580
Alignment:
Q  233 aggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcattttgaaaccttttt 332  Q
    ||||||| |||| ||||| || ||||||||||||||||| || || |  |||||| ||||||||| ||||||||| ||| | | |||||||||||| | |    
T  27234470 aggactataatgatagccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttgaaacctctct 27234569  T
Q  333 tcatgcttagc 343  Q
    |||||||||||    
T  27234570 tcatgcttagc 27234580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 344
Target Start/End: Complemental strand, 27679284 - 27679173
Alignment:
Q  233 aggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcattttgaaaccttttt 332  Q
    |||||||  ||||||||| |||||||||||||| ||| |||| ||   ||||||||  ||||||||||||||||| | |   |||||||||||||| |||    
T  27679284 aggactatcatggtagccggacaagttagcagcctggctcagagcctttttccatccttgcaacctctccatgtttttcggatcattttgaaacctcttt 27679185  T
Q  333 tcatgcttagcc 344  Q
    ||||||| ||||    
T  27679184 tcatgctcagcc 27679173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 220 - 274
Target Start/End: Complemental strand, 26646830 - 26646776
Alignment:
Q  220 aagtggggtacccaggactaaaatggtagcctgacaagttagcagcttggttcag 274  Q
    |||||||||||||||||||| ||||||| || |||||||||||||||||| ||||    
T  26646830 aagtggggtacccaggactataatggtatccggacaagttagcagcttgggtcag 26646776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 220 - 274
Target Start/End: Complemental strand, 26752798 - 26752744
Alignment:
Q  220 aagtggggtacccaggactaaaatggtagcctgacaagttagcagcttggttcag 274  Q
    |||||||||||||||||||| ||||||| || |||||||||||||||||| ||||    
T  26752798 aagtggggtacccaggactataatggtatccggacaagttagcagcttgggtcag 26752744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 220 - 342
Target Start/End: Original strand, 27337901 - 27338023
Alignment:
Q  220 aagtggggtacccaggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcatt 319  Q
    |||||||||||||  |||||||||||| ||| || ||||||||||||||| | || || |  |||||| ||| ||||||||||||||| ||| | | |||    
T  27337901 aagtggggtacccttgactaaaatggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttccttgttatt 27338000  T
Q  320 ttgaaaccttttttcatgcttag 342  Q
    ||| ||| | | |||||||||||    
T  27338001 ttggaacttatcttcatgcttag 27338023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 220 - 342
Target Start/End: Original strand, 27398641 - 27398763
Alignment:
Q  220 aagtggggtacccaggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcatt 319  Q
    |||||||||||||  |||||||||||| ||| || ||||||||||||||| | || || |  |||||| ||| ||||||||||||||| ||| | | |||    
T  27398641 aagtggggtacccttgactaaaatggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttccttgttatt 27398740  T
Q  320 ttgaaaccttttttcatgcttag 342  Q
    ||| ||| | | |||||||||||    
T  27398741 ttggaacttatcttcatgcttag 27398763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 342
Target Start/End: Complemental strand, 26656340 - 26656218
Alignment:
Q  220 aagtggggtacccaggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcatt 319  Q
    |||||||||||||  ||||| |||||||||| |||||||| ||||||| | |||| || |  ||||||  || |||||||| |||||| ||| | | |||    
T  26656340 aagtggggtacccttgactacaatggtagccagacaagttggcagctttggtcagagccatcttccattgctccaacctctgcatgttttccttgttatt 26656241  T
Q  320 ttgaaaccttttttcatgcttag 342  Q
    ||| ||| | |||||||||||||    
T  26656240 ttggaacttcttttcatgcttag 26656218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 342
Target Start/End: Complemental strand, 26762311 - 26762189
Alignment:
Q  220 aagtggggtacccaggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcatt 319  Q
    |||||||||||||  ||||| |||||||||| |||||||| ||||||| | |||| || |  ||||||  || |||||||| |||||| ||| | | |||    
T  26762311 aagtggggtacccttgactacaatggtagccagacaagttggcagctttggtcagagccatcttccattgctccaacctctgcatgttttccttgttatt 26762212  T
Q  320 ttgaaaccttttttcatgcttag 342  Q
    ||| ||| | |||||||||||||    
T  26762211 ttggaacttcttttcatgcttag 26762189  T

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Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 344
Target Start/End: Original strand, 27427476 - 27427566
Alignment:
Q  254 caagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcattttgaaaccttttttcatgcttagcc 344  Q
    ||||||||||||  |  |||| || |||||||||  |||||||||||||||||| | | | |||||||||||||| |||||||||| ||||    
T  27427476 caagttagcagccagactcagagccactttccattgctgcaacctctccatgtttttcgtatcattttgaaacctattttcatgctcagcc 27427566  T

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Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 338
Target Start/End: Original strand, 27531065 - 27531151
Alignment:
Q  252 gacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcattttgaaaccttttttcatgc 338  Q
    ||||||||||| |||||| |||| ||  ||||||||  ||||||||||||  |||||||| | |||||||||||| |||||| ||||    
T  27531065 gacaagttagccgcttggctcagagcttctttccattgctgcaacctctcagtgttatccttatcattttgaaacttttttttatgc 27531151  T

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Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 311
Target Start/End: Complemental strand, 28325829 - 28325737
Alignment:
Q  219 taagtggggtacccaggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatcc 311  Q
    ||||| || ||||||||||| ||||||| |||||| |||||||||| |||  | || || |  |||||| ||||||||||||||||| |||||    
T  28325829 taagtaggttacccaggactgaaatggtggcctgagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccatgctatcc 28325737  T

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Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 309
Target Start/End: Original strand, 28297549 - 28297638
Alignment:
Q  220 aagtggggtacccaggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttat 309  Q
    |||||||||||| |||| | ||||||| ||| || |||||||||| |||  | || |||   |||||| |||||||||||||||||||||    
T  28297549 aagtggggtacctaggattgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccatgttat 28297638  T

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Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 309
Target Start/End: Complemental strand, 28514524 - 28514435
Alignment:
Q  220 aagtggggtacccaggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttat 309  Q
    |||||||||||| |||| | ||||||| ||| || |||||||||| |||  | || |||   |||||| |||||||||||||||||||||    
T  28514524 aagtggggtacctaggattgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccatgttat 28514435  T

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Target: scaffold0277 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 227 - 344
Target Start/End: Original strand, 4514 - 4631
Alignment:
Q  227 gtacccaggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcattttgaaac 326  Q
    ||||||| ||||| |||||||||| |||||||||||||||||| |||| || |  ||||||   ||||||||||||||||||| | | ||||||||||||    
T  4514 gtacccatgactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttattcttatcattttgaaac 4613  T
Q  327 cttttttcatgcttagcc 344  Q
    || |||||||||| ||||    
T  4614 ctcttttcatgctcagcc 4631  T

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Target: scaffold0277; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 337
Target Start/End: Original strand, 13475 - 13585
Alignment:
Q  227 gtacccaggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcattttgaaac 326  Q
    ||||||| ||||| |||||||||| |||||||||||||||||| |||| || |  ||||||   ||||| | ||||||||||| | | ||||||||||||    
T  13475 gtacccatgactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaatcgctccatgttattcttatcattttgaaac 13574  T
Q  327 cttttttcatg 337  Q
    || ||||||||    
T  13575 ctcttttcatg 13585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 233 - 344
Target Start/End: Original strand, 14205 - 14316
Alignment:
Q  233 aggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcattttgaaaccttttt 332  Q
    |||||||  ||||||||| |||||||||||||| ||| |||| ||  ||||||||| |||||||||||||||||| | |   |||||||||||||| |||    
T  14205 aggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatccctgcaacctctccatgtttttcggatcattttgaaacctcttt 14304  T
Q  333 tcatgcttagcc 344  Q
    ||||||| ||||    
T  14305 tcatgctcagcc 14316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 233 - 344
Target Start/End: Original strand, 3269 - 3381
Alignment:
Q  233 aggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatg-ttatccatttcattttgaaacctttt 331  Q
    |||||||  ||||||||| |||||||||||||| ||| |||| || |||||||||| |||||||||||||||| || | |   |||||||||||||| ||    
T  3269 aggactatcatggtagccggacaagttagcagcctggctcagagccactttccatcgctgcaacctctccatgttttttcggatcattttgaaacctctt 3368  T
Q  332 ttcatgcttagcc 344  Q
    |||||||| ||||    
T  3369 ttcatgctcagcc 3381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 337
Target Start/End: Complemental strand, 7869 - 7759
Alignment:
Q  227 gtacccaggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcattttgaaac 326  Q
    ||||||| ||||| |||||||||| |||||||||||||||||| |||| || |  ||||||   ||||| | ||||||||||| | | ||||||||||||    
T  7869 gtacccatgactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaatcgctccatgttattcttatcattttgaaac 7770  T
Q  327 cttttttcatg 337  Q
    || ||||||||    
T  7769 ctcttttcatg 7759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 18679397 - 18679437
Alignment:
Q  227 gtacccaggactaaaatggtagcctgacaagttagcagctt 267  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  18679397 gtacccaggactaaaatggtagccggacaagttagcagctt 18679437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 18723915 - 18723955
Alignment:
Q  227 gtacccaggactaaaatggtagcctgacaagttagcagctt 267  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  18723915 gtacccaggactaaaatggtagccggacaagttagcagctt 18723955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 344
Target Start/End: Complemental strand, 18074079 - 18073989
Alignment:
Q  254 caagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcattttgaaaccttttttcatgcttagcc 344  Q
    ||||||||||||  |  |||| || |||||||||  |||||||||||||||||| | | | |||||||||||||| |||||||||| ||||    
T  18074079 caagttagcagccagactcagagccactttccattgctgcaacctctccatgtttttcgtatcattttgaaacctattttcatgctcagcc 18073989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 18655307 - 18655347
Alignment:
Q  227 gtacccaggactaaaatggtagcctgacaagttagcagctt 267  Q
    ||||||||||||| |||||||||| ||||||||||||||||    
T  18655307 gtacccaggactagaatggtagccggacaagttagcagctt 18655347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 18699230 - 18699270
Alignment:
Q  227 gtacccaggactaaaatggtagcctgacaagttagcagctt 267  Q
    |||||||| ||||||||||||||| ||||||||||||||||    
T  18699230 gtacccagaactaaaatggtagccggacaagttagcagctt 18699270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 18731334 - 18731374
Alignment:
Q  227 gtacccaggactaaaatggtagcctgacaagttagcagctt 267  Q
    ||||||| |||||||||||||||| ||||||||||||||||    
T  18731334 gtacccatgactaaaatggtagccggacaagttagcagctt 18731374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 344
Target Start/End: Complemental strand, 59887 - 59797
Alignment:
Q  254 caagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcattttgaaaccttttttcatgcttagcc 344  Q
    ||||||||||||  |  |||| || |||||||||  |||||||||||||||||| | | | |||||||||||||| |||||||||| ||||    
T  59887 caagttagcagccagactcagagccactttccattgctgcaacctctccatgtttttcgtatcattttgaaacctattttcatgctcagcc 59797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 311
Target Start/End: Complemental strand, 117144 - 117052
Alignment:
Q  219 taagtggggtacccaggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatcc 311  Q
    ||||| || ||||||||||| ||||||| |||||| |||||||||| |||  | || || |  |||||| ||||||||||||||||| |||||    
T  117144 taagtaggttacccaggactgaaatggtggcctgagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccatgctatcc 117052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 269
Target Start/End: Original strand, 28127507 - 28127551
Alignment:
Q  225 gggtacccaggactaaaatggtagcctgacaagttagcagcttgg 269  Q
    |||||||| |||||| |||||||||| ||||||||||||||||||    
T  28127507 gggtaccctggactataatggtagccggacaagttagcagcttgg 28127551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 269
Target Start/End: Original strand, 28164192 - 28164235
Alignment:
Q  226 ggtacccaggactaaaatggtagcctgacaagttagcagcttgg 269  Q
    ||||||| |||||| |||||||||| ||||||||||||||||||    
T  28164192 ggtaccctggactataatggtagccggacaagttagcagcttgg 28164235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 307
Target Start/End: Complemental strand, 3280049 - 3279967
Alignment:
Q  225 gggtacccaggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgtt 307  Q
    ||||||| |||| ||||||||| ||| ||||||||||| |||||||| || || |  |||||| | |||||||||| ||||||    
T  3280049 gggtacctaggattaaaatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacctcttcatgtt 3279967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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