View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14871_low_18 (Length: 337)
Name: NF14871_low_18
Description: NF14871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14871_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 34122310 - 34122633
Alignment:
| Q |
1 |
attgtgcaaacattgtttgaacattgtggacataaaaagccttaccttgtagaccatgatgatgcggttaaaaacttgagatgtttgctcaacaaaattg |
100 |
Q |
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| T |
34122310 |
attgtgcaaacattgtttgaacattgtggacataaaaagccttaccttgtagaccatgatgatgcggttaaaaacttgagatgtttgctcaacaaaattg |
34122409 |
T |
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| Q |
101 |
gagagaatcgtcgtccattgatgttggttctagataatgttttccaaggctcagaatcctttgtcaatgccttcaaggttcaagttccagattataaaat |
200 |
Q |
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| T |
34122410 |
gagagaatcgtcgtccattgatgttggttctagataatgttttccaaggctcagaatcctttgtcaatgccttcaaggttcaagttccagattataaaat |
34122509 |
T |
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| Q |
201 |
tttgataacttctagagttaagtttccac-ggtttcaaacttcattattcttaaagcctcttagcgatgatgatgctgttactgttttccgtcactttgc |
299 |
Q |
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| T |
34122510 |
tttgataacttctagagttaagtttccacgggtttcaaacttcattattcttaaagcctcttagcgatgatgatgctgttactgttttccgtcactttgc |
34122609 |
T |
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| Q |
300 |
actaccaaatgatggaaccacagg |
323 |
Q |
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| T |
34122610 |
actaccaaatgatggaaccacagg |
34122633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 34110555 - 34110861
Alignment:
| Q |
1 |
attgtgcaaacattgtttgaacattgtggacataaaaagccttaccttgtagaccatgatgatgcggttaaaaacttgagatgtttgctcaacaaaattg |
100 |
Q |
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|||||||| ||||| ||| ||||||||||||| | |||||| ||| ||||| | |||||||| |||||| |||||||| ||||||| | |||||||| |
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| T |
34110555 |
attgtgcagacattatttcgacattgtggacatgacgagccttgcctcatagacgacgatgatgcagttaaacacttgagaagtttgctgaccaaaattg |
34110654 |
T |
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| Q |
101 |
gagagaatcgtcgtccattgatgttggttctagataatgttttccaaggctcagaatcctttgtcaatgccttcaaggttcaagttccagattataaaat |
200 |
Q |
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| || | || ||||| ||||||||||||| |||||||||| || ||||||||||||||| || | | ||| |||||||||||||||||| |||||| |
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| T |
34110655 |
gggaaa---gttgtccaatgatgttggttctggataatgtttgcccaggctcagaatccttagttgaggactttcaggttcaagttccagattgtaaaat |
34110751 |
T |
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| Q |
201 |
tttgataacttctagagttaagtttccacggtttcaaacttcattattcttaaagcctcttagcgatgatgatgctgttactgttttccgtcactttgca |
300 |
Q |
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||||||||||||||||||| |||||||||||||| | |||| ||||||||||||| || || |||||||| || ||||| |||| || ||||||| |
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| T |
34110752 |
tttgataacttctagagttgagtttccacggttt---agttcactattcttaaagccgctcagagatgatgacgcagttaccctttttggtagctttgca |
34110848 |
T |
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| Q |
301 |
ctaccaaatgatg |
313 |
Q |
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| T |
34110849 |
ctaccaaatgatg |
34110861 |
T |
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