View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14871_low_19 (Length: 327)

Name: NF14871_low_19
Description: NF14871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14871_low_19
NF14871_low_19
[»] chr2 (5 HSPs)
chr2 (73-189)||(144580-144694)
chr2 (73-189)||(32623829-32623944)
chr2 (70-189)||(11195820-11195938)
chr2 (159-189)||(17646530-17646560)
chr2 (156-189)||(18634433-18634466)
[»] chr7 (5 HSPs)
chr7 (73-189)||(26855183-26855297)
chr7 (73-189)||(4106956-4107072)
chr7 (97-189)||(35213102-35213193)
chr7 (113-186)||(36031554-36031625)
chr7 (97-189)||(38489058-38489149)
[»] chr4 (6 HSPs)
chr4 (73-189)||(20543554-20543669)
chr4 (199-327)||(25102389-25102519)
chr4 (20-71)||(25102506-25102557)
chr4 (97-189)||(43517310-43517401)
chr4 (125-189)||(27299634-27299697)
chr4 (129-189)||(3098500-3098558)
[»] chr5 (6 HSPs)
chr5 (73-189)||(5100193-5100307)
chr5 (73-189)||(35100975-35101090)
chr5 (73-189)||(21368472-21368586)
chr5 (122-189)||(979693-979759)
chr5 (129-189)||(34373235-34373293)
chr5 (157-189)||(16906777-16906809)
[»] chr6 (2 HSPs)
chr6 (73-189)||(14687563-14687677)
chr6 (116-189)||(14320720-14320792)
[»] chr1 (8 HSPs)
chr1 (73-189)||(52028153-52028268)
chr1 (82-189)||(33150463-33150569)
chr1 (80-189)||(34352493-34352601)
chr1 (119-189)||(5808230-5808299)
chr1 (119-189)||(13868417-13868486)
chr1 (94-189)||(45794900-45794994)
chr1 (103-189)||(26510952-26511036)
chr1 (157-189)||(50729510-50729542)
[»] chr8 (2 HSPs)
chr8 (94-189)||(9510264-9510357)
chr8 (122-189)||(6244617-6244683)
[»] chr3 (2 HSPs)
chr3 (122-189)||(40514311-40514377)
chr3 (97-151)||(20857462-20857516)


Alignment Details
Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 73 - 189
Target Start/End: Original strand, 144580 - 144694
Alignment:
Q  73 gaccattgctttgactctaatttatatgtttgactgttattaaggatgacacttttagtacatcttgtacttagatgttcactctgccgttgttaatata 172  Q
    |||||||| |||||||||| ||| |||||||||||||| ||| || |||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  144580 gaccattgttttgactctattttgtatgtttgactgtttttaggggtgacacttttagtacatcttgtacttagatgttca--ctgccgttgttaatata 144677  T
Q  173 tttcatttttatgtctt 189  Q
    || ||||||||||||||    
T  144678 ttccatttttatgtctt 144694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 73 - 189
Target Start/End: Complemental strand, 32623944 - 32623829
Alignment:
Q  73 gaccattgctttgactctaatttatatgtttgactgttattaaggatgacacttttagtacatcttgtacttagatgttcactctgccgttgttaatata 172  Q
    |||| |||||||||||||| ||| |||||||||||||||| | || || ||||||||||||||||||||||||| ||||    |||||||||||||||||    
T  32623944 gacctttgctttgactctactttgtatgtttgactgttatcaggggtggcacttttagtacatcttgtacttaggtgtt-ttactgccgttgttaatata 32623846  T
Q  173 tttcatttttatgtctt 189  Q
    || ||||||||||||||    
T  32623845 ttccatttttatgtctt 32623829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 70 - 189
Target Start/End: Complemental strand, 11195938 - 11195820
Alignment:
Q  70 attgaccattgctttgactctaatttatatgtttgactgttattaaggatgacacttttagtacatcttgtacttagatgttcactctgccgttgttaat 169  Q
    ||||||| ||||||||||| || |||  |||| ||||| |||||| || |||||||||||||||||||| ||||||| ||||  | || |||||||||||    
T  11195938 attgacctttgctttgactttactttgcatgtctgactattattaggggtgacacttttagtacatcttatacttaggtgtt-tccctaccgttgttaat 11195840  T
Q  170 atatttcatttttatgtctt 189  Q
    ||||| ||||||||||||||    
T  11195839 atattccatttttatgtctt 11195820  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 189
Target Start/End: Complemental strand, 17646560 - 17646530
Alignment:
Q  159 ccgttgttaatatatttcatttttatgtctt 189  Q
    |||||||||||||||||||||||||||||||    
T  17646560 ccgttgttaatatatttcatttttatgtctt 17646530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 189
Target Start/End: Complemental strand, 18634466 - 18634433
Alignment:
Q  156 ctgccgttgttaatatatttcatttttatgtctt 189  Q
    ||||||||||||||||||| ||||||||||||||    
T  18634466 ctgccgttgttaatatattccatttttatgtctt 18634433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 73 - 189
Target Start/End: Complemental strand, 26855297 - 26855183
Alignment:
Q  73 gaccattgctttgactctaatttatatgtttgactgttattaaggatgacacttttagtacatcttgtacttagatgttcactctgccgttgttaatata 172  Q
    |||||||| |||||||||| ||| |||||||||||||| ||| || |||||||||||||||||||||||||||| ||||||  |||||| ||||||||||    
T  26855297 gaccattgttttgactctattttgtatgtttgactgtttttaggggtgacacttttagtacatcttgtacttaggtgttca--ctgccgctgttaatata 26855200  T
Q  173 tttcatttttatgtctt 189  Q
    || ||||||||||||||    
T  26855199 ttccatttttatgtctt 26855183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 73 - 189
Target Start/End: Original strand, 4106956 - 4107072
Alignment:
Q  73 gaccattgctttgactctaatttatatgtttgactgttattaagga-tgacacttttagtacatcttgtacttagatgttcactctgccgttgttaatat 171  Q
    |||| ||| ||||||| || ||| |||||||||||||||||| ||  ||||| |||||||||||||| ||||||||||||  | ||||||||||||||||    
T  4106956 gacctttgttttgactttactttgtatgtttgactgttattagggggtgacatttttagtacatcttatacttagatgttt-cactgccgttgttaatat 4107054  T
Q  172 atttcatttttatgtctt 189  Q
    |||  |||||||||||||    
T  4107055 attcaatttttatgtctt 4107072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 189
Target Start/End: Complemental strand, 35213193 - 35213102
Alignment:
Q  97 tatgtttgactgttattaaggatgacacttttagtacatcttgtacttagatgttcactctgccgttgttaatatatttcatttttatgtctt 189  Q
    ||||||||||| ||  || || || ||||||||||||||||||||||||| ||||  | ||||||||||||||||||  ||||||||||||||    
T  35213193 tatgtttgactatttctaggggtggcacttttagtacatcttgtacttaggtgtt-tcactgccgttgttaatatatcccatttttatgtctt 35213102  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 186
Target Start/End: Complemental strand, 36031625 - 36031554
Alignment:
Q  113 taaggatgacacttttagtacatcttgtacttagatgttcactctgccgttgttaatatatttcatttttatgt 186  Q
    ||||| ||||||||||| |||||||||||||||| ||||  | ||||||||||||||||| |||||||||||||    
T  36031625 taagggtgacacttttaatacatcttgtacttaggtgtt-tcactgccgttgttaatata-ttcatttttatgt 36031554  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 189
Target Start/End: Original strand, 38489058 - 38489149
Alignment:
Q  97 tatgtttgactgttattaaggatgacacttttagtacatcttgtacttagatgttcactctgccgttgttaatatatttcatttttatgtctt 189  Q
    ||||||||||| ||  || |||||||||||||| ||||||||||| | || ||||  | |||||||||||| |||||  ||||||||||||||    
T  38489058 tatgtttgactatttctagggatgacacttttaatacatcttgtattaaggtgtt-tcactgccgttgttattatataccatttttatgtctt 38489149  T

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Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 73 - 189
Target Start/End: Complemental strand, 20543669 - 20543554
Alignment:
Q  73 gaccattgctttgactctaatttatatgtttgactgttattaaggatgacacttttagtacatcttgtacttagatgttcactctgccgttgttaatata 172  Q
    |||| |||||||||||||| ||| |||||||||||||||||| || || ||||||||||||||||||||||||| ||||  | |||||||||||||||||    
T  20543669 gacctttgctttgactctactttgtatgtttgactgttattaggggtggcacttttagtacatcttgtacttaggtgtt-tcactgccgttgttaatata 20543571  T
Q  173 tttcatttttatgtctt 189  Q
    || ||||||||||||||    
T  20543570 ttccatttttatgtctt 20543554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 199 - 327
Target Start/End: Complemental strand, 25102519 - 25102389
Alignment:
Q  199 atattgacattaatccttctcttagctttcccttnnnnnnnnnnnnctaactgtgtatcatatgggctaattattctacgtcacgtgacatactaaaatc 298  Q
    |||||||||||||||||||| |||||||||||||            ||||| |||||||||||||||||||||||||||||||||||||||||||||| |    
T  25102519 atattgacattaatccttctgttagctttcccttaaataataaaaactaacggtgtatcatatgggctaattattctacgtcacgtgacatactaaaaac 25102420  T
Q  299 --aatttctgaattaaaataaattaaataaa 327  Q
      |||| ||||||||||||||||||||||||    
T  25102419 aaaattgctgaattaaaataaattaaataaa 25102389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 25102557 - 25102506
Alignment:
Q  20 actcttttctttggcattgattcttatactttataaaaatattgacattaat 71  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  25102557 actcttttctttagcattgattcttatactttataaaaatattgacattaat 25102506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 97 - 189
Target Start/End: Original strand, 43517310 - 43517401
Alignment:
Q  97 tatgtttgactgttattaaggatgacacttttagtacatcttgtacttagatgttcactctgccgttgttaatatatttcatttttatgtctt 189  Q
    ||||||||||| ||  || || |||||||||||||||||||||||||||| ||||  | |||| |||||||||||||| ||||||||||||||    
T  43517310 tatgtttgactatttctaggggtgacacttttagtacatcttgtacttaggtgtt-tcactgctgttgttaatatattccatttttatgtctt 43517401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 189
Target Start/End: Complemental strand, 27299697 - 27299634
Alignment:
Q  125 ttttagtacatcttgtacttagatgttcactctgccgttgttaatatatttcatttttatgtctt 189  Q
    |||||||||||||||||||||||||  | | ||| ||| ||||||||||| ||||||||||||||    
T  27299697 ttttagtacatcttgtacttagatg-actcactgtcgtagttaatatattccatttttatgtctt 27299634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 189
Target Start/End: Complemental strand, 3098558 - 3098500
Alignment:
Q  129 agtacatcttgtacttagatgttcactctgccgttgttaatatatttcatttttatgtctt 189  Q
    ||||||||||||| |||| || ||||   ||| ||||||||||||||||||||||||||||    
T  3098558 agtacatcttgtatttaggtggtcacc--gcctttgttaatatatttcatttttatgtctt 3098500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 73 - 189
Target Start/End: Original strand, 5100193 - 5100307
Alignment:
Q  73 gaccattgctttgactctaatttatatgtttgactgttattaaggatgacacttttagtacatcttgtacttagatgttcactctgccgttgttaatata 172  Q
    ||||||||||||||||||  ||| |||||||||||||| ||| || |||||| |||||||||||||||||||||  |||||  |||||||||||||||||    
T  5100193 gaccattgctttgactcttttttgtatgtttgactgtttttaggggtgacacctttagtacatcttgtacttaggcgttca--ctgccgttgttaatata 5100290  T
Q  173 tttcatttttatgtctt 189  Q
    || ||||||||||||||    
T  5100291 ttccatttttatgtctt 5100307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 73 - 189
Target Start/End: Complemental strand, 35101090 - 35100975
Alignment:
Q  73 gaccattgctttgactctaatttatatgtttgactgttattaaggatgacacttttagtacatcttgtacttagatgttcactctgccgttgttaatata 172  Q
    |||| |||||||||||||| ||| ||||||| |||||||||| ||||| ||||||||||||||||||||||||| ||||  | | |||||||||||||||    
T  35101090 gacctttgctttgactctactttgtatgtttaactgttattagggatggcacttttagtacatcttgtacttaggtgtt-tcaccgccgttgttaatata 35100992  T
Q  173 tttcatttttatgtctt 189  Q
    || ||||||||||||||    
T  35100991 ttccatttttatgtctt 35100975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 73 - 189
Target Start/End: Original strand, 21368472 - 21368586
Alignment:
Q  73 gaccattgctttgactctaatttatatgtttgactgttattaaggatgacacttttagtacatcttgtacttagatgttcactctgccgttgttaatata 172  Q
    |||||||| |||||||||| ||| ||| |||||||||||||| ||  | ||||||||||||||||||||||||| ||||  | |||||||||||||||||    
T  21368472 gaccattgttttgactctattttgtatatttgactgttattaggggcggcacttttagtacatcttgtacttaggtgtt--cgctgccgttgttaatata 21368569  T
Q  173 tttcatttttatgtctt 189  Q
    || ||||||||||||||    
T  21368570 ttccatttttatgtctt 21368586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 122 - 189
Target Start/End: Original strand, 979693 - 979759
Alignment:
Q  122 cacttttagtacatcttgtacttagatgttcactctgccgttgttaatatatttcatttttatgtctt 189  Q
    ||||||||||||||||||||||||||||||  | ||||| ||||||||||||| ||||||||||||||    
T  979693 cacttttagtacatcttgtacttagatgtt-tcactgccattgttaatatattccatttttatgtctt 979759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 189
Target Start/End: Original strand, 34373235 - 34373293
Alignment:
Q  129 agtacatcttgtacttagatgttcactctgccgttgttaatatatttcatttttatgtctt 189  Q
    ||||||||||||||| || || ||||   ||| ||||||||||||||||||||||||||||    
T  34373235 agtacatcttgtactaaggtggtcacc--gcctttgttaatatatttcatttttatgtctt 34373293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 189
Target Start/End: Complemental strand, 16906809 - 16906777
Alignment:
Q  157 tgccgttgttaatatatttcatttttatgtctt 189  Q
    |||||||||||||||||| ||||||||||||||    
T  16906809 tgccgttgttaatatattccatttttatgtctt 16906777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 73 - 189
Target Start/End: Original strand, 14687563 - 14687677
Alignment:
Q  73 gaccattgctttgactctaatttatatgtttgactgttattaaggatgacacttttagtacatcttgtacttagatgttcactctgccgttgttaatata 172  Q
    ||||||||||||||||||  ||| |||||||||||||| ||| || |||||| |||||||||||||||||||||   ||||  |||||||||||||||||    
T  14687563 gaccattgctttgactcttttttgtatgtttgactgtttttaggggtgacacctttagtacatcttgtacttaggcattca--ctgccgttgttaatata 14687660  T
Q  173 tttcatttttatgtctt 189  Q
    || ||||||||||||||    
T  14687661 ttccatttttatgtctt 14687677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 14320720 - 14320792
Alignment:
Q  116 ggatgacacttttagtacatcttgtacttagatgttcactctgccgttgttaatatatttcatttttatgtctt 189  Q
    ||||| ||||||||||||||||||||||||| ||||  | ||||||||||||||||||  ||||||||||||||    
T  14320720 ggatggcacttttagtacatcttgtacttaggtgtt-tcactgccgttgttaatatatcccatttttatgtctt 14320792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 9e-24; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 73 - 189
Target Start/End: Complemental strand, 52028268 - 52028153
Alignment:
Q  73 gaccattgctttgactctaatttatatgtttgactgttattaaggatgacacttttagtacatcttgtacttagatgttcactctgccgttgttaatata 172  Q
    |||| |||||||||||||||||| |||||||||||||||||| || || |||||||| |||||||| ||||||| ||||  | |||| || |||||||||    
T  52028268 gacctttgctttgactctaatttgtatgtttgactgttattaggggtggcacttttaatacatcttatacttaggtgtt-tcactgctgtcgttaatata 52028170  T
Q  173 tttcatttttatgtctt 189  Q
    || ||||||||||||||    
T  52028169 ttccatttttatgtctt 52028153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 82 - 189
Target Start/End: Complemental strand, 33150569 - 33150463
Alignment:
Q  82 tttgactctaatttatatgtttgactgttattaaggatgacacttttagtacatcttgtacttagatgttcactctgccgttgttaatatatttcatttt 181  Q
    |||||||||| ||| |||||||||||||||||| || || |||||||| ||||| |||||||||| ||||  | ||||||||||||||||||| ||||||    
T  33150569 tttgactctactttgtatgtttgactgttattaggggtggcacttttactacattttgtacttaggtgtt-tcactgccgttgttaatatattccatttt 33150471  T
Q  182 tatgtctt 189  Q
    ||||||||    
T  33150470 tatgtctt 33150463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 80 - 189
Target Start/End: Complemental strand, 34352601 - 34352493
Alignment:
Q  80 gctttgactctaatttatatgtttgactgttattaaggatgacacttttagtacatcttgtacttagatgttcactctgccgttgttaatatatttcatt 179  Q
    |||||||||||   || ||||| |||||||| ||| || |||||||||||||||||||||||||||| ||||  | ||||||||||| ||||||| ||||    
T  34352601 gctttgactcttcattgtatgtctgactgtttttaggggtgacacttttagtacatcttgtacttaggtgtt-tcactgccgttgttgatatattccatt 34352503  T
Q  180 tttatgtctt 189  Q
    ||||||||||    
T  34352502 tttatgtctt 34352493  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 189
Target Start/End: Complemental strand, 5808299 - 5808230
Alignment:
Q  119 tgacacttttagtacatcttgtacttagatgttcactctgccgttgttaatatatttcatttttatgtctt 189  Q
    |||||||||||||||||||||||||||| ||  | | ||||||||||||||||||| ||||||||||||||    
T  5808299 tgacacttttagtacatcttgtacttaggtga-ctcactgccgttgttaatatattccatttttatgtctt 5808230  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 189
Target Start/End: Original strand, 13868417 - 13868486
Alignment:
Q  119 tgacacttttagtacatcttgtacttagatgttcactctgccgttgttaatatatttcatttttatgtctt 189  Q
    ||||||||||| |||||||||||||||| ||||  | |||||||||||||||||| |||||||||||||||    
T  13868417 tgacacttttaatacatcttgtacttaggtgttt-cactgccgttgttaatatatctcatttttatgtctt 13868486  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 189
Target Start/End: Complemental strand, 45794994 - 45794900
Alignment:
Q  94 ttatatgtttgactgttattaaggatgacacttttagtacatcttgtacttagatgttcactctgccgttgttaatatatttcatttttatgtctt 189  Q
    |||||||||||||| ||  || || ||| |||||||||||||||||||||||| ||||  | ||||||||||||||||||  ||||||||| ||||    
T  45794994 ttatatgtttgactatttctaggggtgatacttttagtacatcttgtacttaggtgtt-tcactgccgttgttaatatatcccatttttatatctt 45794900  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 189
Target Start/End: Original strand, 26510952 - 26511036
Alignment:
Q  103 tgactgttattaaggatgacacttttagtacatcttgtacttagatg-ttcactctgccgttgttaatatatttcatttttatgtctt 189  Q
    |||||||| | | |||||||||||| |||||||||||||||||| || ||||||   ||||| |||||||||| ||||||||||||||    
T  26510952 tgactgttttcagggatgacacttt-agtacatcttgtacttaggtggttcacta--ccgttattaatatattccatttttatgtctt 26511036  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 189
Target Start/End: Complemental strand, 50729542 - 50729510
Alignment:
Q  157 tgccgttgttaatatatttcatttttatgtctt 189  Q
    ||||| |||||||||||||||||||||||||||    
T  50729542 tgccggtgttaatatatttcatttttatgtctt 50729510  T

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Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 94 - 189
Target Start/End: Complemental strand, 9510357 - 9510264
Alignment:
Q  94 ttatatgtttgactgttattaaggatgacacttttagtacatcttgtacttagatgttcactctgccgttgttaatatatttcatttttatgtctt 189  Q
    |||||||  |||||||| ||| || ||||||||||||||||||||||| |||| ||  | | ||||||||||||||||||||||||||||||||||    
T  9510357 ttatatgactgactgtt-ttaggggtgacacttttagtacatcttgtatttaggtga-ctcactgccgttgttaatatatttcatttttatgtctt 9510264  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 189
Target Start/End: Complemental strand, 6244683 - 6244617
Alignment:
Q  122 cacttttagtacatcttgtacttagatgttcactctgccgttgttaatatatttcatttttatgtctt 189  Q
    |||| |||||||||||||||||||| ||  | | |||||||||||||||||||  |||||||||||||    
T  6244683 cactcttagtacatcttgtacttaggtga-ctcactgccgttgttaatatattcaatttttatgtctt 6244617  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 189
Target Start/End: Original strand, 40514311 - 40514377
Alignment:
Q  122 cacttttagtacatcttgtacttagatgttcactctgccgttgttaatatatttcatttttatgtctt 189  Q
    ||||||||||||||||||||||||| ||||  | ||||||||||||||||||  ||||||||||||||    
T  40514311 cacttttagtacatcttgtacttaggtgtt-tcactgccgttgttaatatatcccatttttatgtctt 40514377  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 151
Target Start/End: Complemental strand, 20857516 - 20857462
Alignment:
Q  97 tatgtttgactgttattaaggatgacacttttagtacatcttgtacttagatgtt 151  Q
    ||||||||||| ||  || || |||||||||||||||||||||||||||| ||||    
T  20857516 tatgtttgactatttctaggggtgacacttttagtacatcttgtacttaggtgtt 20857462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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