View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14871_low_2 (Length: 692)

Name: NF14871_low_2
Description: NF14871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14871_low_2
NF14871_low_2
[»] chr4 (24 HSPs)
chr4 (114-654)||(42637975-42638520)
chr4 (12-234)||(42566330-42566552)
chr4 (445-678)||(42566560-42566796)
chr4 (12-95)||(42639128-42639211)
chr4 (14-94)||(21945747-21945827)
chr4 (26-93)||(49987513-49987580)
chr4 (17-95)||(31897536-31897614)
chr4 (17-95)||(31961374-31961452)
chr4 (17-91)||(35690367-35690441)
chr4 (14-91)||(7682022-7682099)
chr4 (58-95)||(8599049-8599086)
chr4 (33-94)||(13805374-13805435)
chr4 (58-95)||(37488228-37488265)
chr4 (14-95)||(10209127-10209210)
chr4 (14-94)||(28351652-28351732)
chr4 (14-94)||(45204948-45205027)
chr4 (38-95)||(18966722-18966779)
chr4 (22-95)||(26356720-26356793)
chr4 (50-95)||(44719472-44719517)
chr4 (38-95)||(47147490-47147547)
chr4 (64-93)||(50967137-50967166)
chr4 (32-93)||(53540401-53540462)
chr4 (51-95)||(20999130-20999174)
chr4 (58-94)||(33225942-33225978)
[»] chr8 (19 HSPs)
chr8 (14-93)||(29700369-29700448)
chr8 (15-90)||(25985612-25985687)
chr8 (14-93)||(38178370-38178449)
chr8 (51-95)||(4011213-4011257)
chr8 (27-94)||(9904991-9905058)
chr8 (15-94)||(32931055-32931134)
chr8 (14-93)||(45512605-45512684)
chr8 (20-90)||(2216387-2216457)
chr8 (14-92)||(45419328-45419406)
chr8 (14-95)||(10080015-10080096)
chr8 (46-95)||(23023350-23023399)
chr8 (51-95)||(35643714-35643758)
chr8 (59-95)||(39967607-39967643)
chr8 (59-94)||(5127379-5127414)
chr8 (52-95)||(5908777-5908820)
chr8 (14-95)||(3079712-3079792)
chr8 (52-93)||(17491764-17491805)
chr8 (51-84)||(43733337-43733370)
chr8 (51-95)||(38392001-38392045)
[»] scaffold0018 (1 HSPs)
scaffold0018 (15-94)||(178529-178608)
[»] chr5 (16 HSPs)
chr5 (14-95)||(1525737-1525818)
chr5 (14-95)||(12576968-12577049)
chr5 (29-94)||(27990-28055)
chr5 (14-95)||(2713037-2713118)
chr5 (18-94)||(6859478-6859554)
chr5 (14-86)||(11002538-11002610)
chr5 (14-93)||(15489602-15489681)
chr5 (52-95)||(38684611-38684654)
chr5 (14-91)||(7359372-7359449)
chr5 (46-95)||(27998566-27998615)
chr5 (27-95)||(38578629-38578697)
chr5 (32-95)||(18698905-18698968)
chr5 (51-94)||(29922414-29922457)
chr5 (21-95)||(14749407-14749481)
chr5 (38-94)||(9235166-9235220)
chr5 (18-94)||(6889090-6889166)
[»] chr2 (12 HSPs)
chr2 (14-95)||(19235092-19235173)
chr2 (14-95)||(38435045-38435126)
chr2 (12-94)||(26784449-26784531)
chr2 (14-95)||(33504316-33504397)
chr2 (51-95)||(33287551-33287595)
chr2 (15-95)||(44437829-44437909)
chr2 (14-93)||(18959004-18959083)
chr2 (41-94)||(26670888-26670941)
chr2 (14-95)||(37470241-37470322)
chr2 (14-95)||(37481725-37481806)
chr2 (14-95)||(42543328-42543409)
chr2 (51-95)||(19855592-19855636)
[»] chr1 (22 HSPs)
chr1 (14-91)||(9599506-9599583)
chr1 (38-95)||(29577250-29577307)
chr1 (21-94)||(32404635-32404708)
chr1 (14-94)||(9509411-9509491)
chr1 (32-95)||(12231476-12231539)
chr1 (32-95)||(42501219-42501282)
chr1 (32-95)||(43423830-43423893)
chr1 (12-90)||(12261826-12261904)
chr1 (14-95)||(6025698-6025779)
chr1 (14-95)||(38868975-38869056)
chr1 (32-89)||(51584855-51584912)
chr1 (38-94)||(36339912-36339968)
chr1 (14-90)||(50771669-50771745)
chr1 (51-94)||(3818965-3819008)
chr1 (58-95)||(8203242-8203279)
chr1 (38-95)||(8342989-8343046)
chr1 (22-95)||(8796310-8796383)
chr1 (58-95)||(19969320-19969357)
chr1 (58-95)||(40416508-40416545)
chr1 (31-95)||(10272368-10272432)
chr1 (58-94)||(29128920-29128956)
chr1 (51-95)||(30834085-30834129)
[»] chr3 (13 HSPs)
chr3 (21-95)||(11581544-11581618)
chr3 (55-95)||(36820085-36820125)
chr3 (14-85)||(38430941-38431012)
chr3 (51-94)||(39600790-39600833)
chr3 (32-94)||(31261051-31261113)
chr3 (58-91)||(43308699-43308732)
chr3 (32-95)||(21200659-21200722)
chr3 (52-95)||(40982027-40982070)
chr3 (51-93)||(54365085-54365127)
chr3 (58-95)||(2340825-2340862)
chr3 (38-91)||(33755454-33755507)
chr3 (14-94)||(42510125-42510205)
chr3 (51-95)||(45493800-45493844)
[»] chr7 (13 HSPs)
chr7 (22-94)||(28628042-28628114)
chr7 (27-95)||(30814779-30814847)
chr7 (31-90)||(14593870-14593929)
chr7 (42-95)||(45601597-45601650)
chr7 (51-91)||(12966146-12966186)
chr7 (38-94)||(44401234-44401290)
chr7 (31-90)||(16013393-16013452)
chr7 (16-94)||(36136859-36136937)
chr7 (59-95)||(1569154-1569190)
chr7 (58-86)||(18605263-18605291)
chr7 (51-95)||(40830332-40830376)
chr7 (15-95)||(42177126-42177206)
chr7 (51-91)||(45841090-45841130)
[»] chr6 (7 HSPs)
chr6 (38-95)||(34613-34670)
chr6 (14-94)||(8364649-8364729)
chr6 (14-93)||(9593818-9593895)
chr6 (31-95)||(10617342-10617406)
chr6 (14-94)||(5095927-5096007)
chr6 (51-95)||(7080470-7080514)
chr6 (59-95)||(31831967-31832003)
[»] scaffold0010 (1 HSPs)
scaffold0010 (62-94)||(160433-160465)


Alignment Details
Target: chr4 (Bit Score: 439; Significance: 0; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 114 - 654
Target Start/End: Complemental strand, 42638520 - 42637975
Alignment:
Q  114 tgaagaatatggtgcgtaatgtgattgaagggaatttcgatgaggcttgttctgggctcaagcaattgtatgacttgggatattcccccacagatatcat 213  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42638520 tgaagaatatggtgcgcaatgtgattgaagggaatttcgatgaggcttgttctgggctcaagcaattgtatgacttgggatattcccccacagatatcat 42638421  T
Q  214 caccacactttttcgtatcattaaaagttatgatatggcagagtacttgaaactggaattcaagaaggtaaatgaatacctggttgctaaatttgtatta 313  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||| ||||    
T  42638420 caccacactttttcgtatcataaaaagttatgatatggcagagtacttgaaactggaattcatgaaggtaaatgaatatctggttgccaaatttgcatta 42638321  T
Q  314 gttttctgacgaaagtatgggattgacacaagactttcttcaaattgcaggaaactggatttgctcatatgaggatttgcgacggagttggttcttatct 413  Q
    || || |||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42638320 gtgttttgacgaaagtatgggact--cacaagactttcttcaaattgcaggaaactggatttgctcatatgaggatttgcgacggagttggttcttatct 42638223  T
Q  414 tcagatgtgtggtctgttggctaagtttgctcttgttcgcgaaactgctaaagctgcatgagtaggtcctaagtgcaactgatac-------tacttttt 506  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||       || |||||    
T  42638222 tcagatgtgcggtctgttggctaagtttgctcttgttcgcgacactgctaacgctgcatgagtaggtcctaagtgcaactgatacacatcattagttttt 42638123  T
Q  507 ctggttttatggtagtgagaatgttgtactgatgaaacatgtagattttaaattctgatttccatatgttgactgatacattaatgcttcaacttatata 606  Q
    | || |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  42638122 ccggctttatggtagtgagaatgctgtactgatgaaacatgtagattttaaatcctgatttccatatgttgactgatacattaatgcttcaacttatata 42638023  T
Q  607 aatatgttatgtttagcttggttcaatatcactgttcctatattattt 654  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  42638022 aatatgttatgtttagcttggttcaatatcactgttcgtatattattt 42637975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 12 - 234
Target Start/End: Original strand, 42566330 - 42566552
Alignment:
Q  12 gggtagattagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagatcggatagaaatatggta 111  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42566330 gggtagattagatgtaggagagtcatatcactagaggttgaggaatacctaaaaaaactacaagagaaactattaagaaagatcggatagaaatatggta 42566429  T
Q  112 tttgaagaatatggtgcgtaatgtgattgaagggaatttcgatgaggcttgttctgggctcaagcaattgtatgacttgggatattcccccacagatatc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42566430 tttgaagaatatggtgcgtaatgtgattgaagggaatttcgatgaggcttgttctgggctcaagcaattgtatgacttgggatattcccccacagatatc 42566529  T
Q  212 atcaccacactttttcgtatcat 234  Q
    ||||||||| |||||| ||||||    
T  42566530 atcaccacaatttttcatatcat 42566552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 445 - 678
Target Start/End: Original strand, 42566560 - 42566796
Alignment:
Q  445 cttgttcgcgaaactgctaaagctgcatgagtaggtcctaagtgcaactgatac-------tactttttctggttttatggtagtgagaatgttgtactg 537  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||    
T  42566560 cttgttcgcgacactgctaaagctgcatgagtaggtcctaagtgcaactgatacacatcattactttttctggttttatggtagtgagaatgttgtactg 42566659  T
Q  538 atgaaacatgtagattttaaattctgatttccatatgttgactgatacattaatgcttcaacttatataaatatgttatgtttagcttggttcaatatca 637  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42566660 atgaaacatgtagattttaaattctgatttccatatgtttactgatacattaatgcttcaacttatataaatatgttatgtttagcttggttcaatatca 42566759  T
Q  638 ctgttcctatattatttatttggtatagcattctaatttat 678  Q
    |||||||||||    ||||||||||||||||||||||||||    
T  42566760 ctgttcctata----ttatttggtatagcattctaatttat 42566796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 12 - 95
Target Start/End: Complemental strand, 42639211 - 42639128
Alignment:
Q  12 gggtagattagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    ||||| |||||||| ||| |||||| |||||||| ||| |||||||| ||||||||||| ||||||||||||||||||||||||    
T  42639211 gggtaaattagatggaggggagtcaaatcactagaggtagaggaatatctagaaaaactgcaagagaaactattaagaaagatc 42639128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 21945827 - 21945747
Alignment:
Q  14 gtagattagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagat 94  Q
    |||||| ||||| |||| ||||| |||||||| || ||||||| ||||||||||||||  | ||||||||||| |||||||    
T  21945827 gtagatcagatggaggatagtcacatcactagaggctgaggaagacctagaaaaactatcatagaaactattaggaaagat 21945747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 49987513 - 49987580
Alignment:
Q  26 taggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaaga 93  Q
    ||||| |||||  ||||||| ||  |||||| |||||||||||||| |||||||||||||||||||||    
T  49987513 taggatagtcaattcactagaggcagaggaagacctagaaaaactataagagaaactattaagaaaga 49987580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 31897614 - 31897536
Alignment:
Q  17 gattagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    ||||||||| ||| |||||| |||||||| ||| | || | |||||||||||||| |||||||||||||| ||| ||||    
T  31897614 gattagatggaggggagtcagatcactagaggtaggggtagacctagaaaaactataagagaaactattaggaaggatc 31897536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 31961452 - 31961374
Alignment:
Q  17 gattagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    ||||||||| ||  |||||| |||||||| ||| | || | |||||||||||||| |||||||||||||| ||||||||    
T  31961452 gattagatggagaggagtcaaatcactagaggtaggggtagacctagaaaaactataagagaaactattaggaaagatc 31961374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 35690367 - 35690441
Alignment:
Q  17 gattagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaa 91  Q
    ||||||||| |||| ||||| ||||  || ||| |||||| |||||||||||||| |||||||||||||| ||||    
T  35690367 gattagatggaggaaagtcagatcaaaagaggtagaggaagacctagaaaaactataagagaaactattacgaaa 35690441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 91
Target Start/End: Complemental strand, 7682099 - 7682022
Alignment:
Q  14 gtagattagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaa 91  Q
    |||||||||||| |||  ||||| |||||||| ||  |||||| |||| ||||||||| |||||||||||| ||||||    
T  7682099 gtagattagatggagggtagtcacatcactagaggcagaggaagacctggaaaaactataagagaaactatcaagaaa 7682022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 95
Target Start/End: Complemental strand, 8599086 - 8599049
Alignment:
Q  58 acctagaaaaactacaagagaaactattaagaaagatc 95  Q
    |||||||||||||| |||||||||||||||||||||||    
T  8599086 acctagaaaaactataagagaaactattaagaaagatc 8599049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 13805435 - 13805374
Alignment:
Q  33 gtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagat 94  Q
    |||| |||||||| ||  |||||| |||||||||||||| |||||||||||| |||||||||    
T  13805435 gtcagatcactagaggcagaggaaaacctagaaaaactataagagaaactatgaagaaagat 13805374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 95
Target Start/End: Original strand, 37488228 - 37488265
Alignment:
Q  58 acctagaaaaactacaagagaaactattaagaaagatc 95  Q
    |||||||||||||| |||||||||||||||||||||||    
T  37488228 acctagaaaaactataagagaaactattaagaaagatc 37488265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 10209127 - 10209210
Alignment:
Q  14 gtagattagatgtaggagagtcatatcactaggggttgagga--atacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    |||||| ||||| ||||||||||||| ||||| ||| | ||   | |||||||||||||| |||||||||||||||||| ||||    
T  10209127 gtagatcagatggaggagagtcatatgactagtggtagggggggagacctagaaaaactataagagaaactattaagaaggatc 10209210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 28351652 - 28351732
Alignment:
Q  14 gtagattagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagat 94  Q
    |||||| ||||| |||| ||||| || || || ||| ||| || |||||||||||||| |||||||||||||| |||||||    
T  28351652 gtagatcagatggaggatagtcagattacaagaggtagagaaagacctagaaaaactataagagaaactattacgaaagat 28351732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 45205027 - 45204948
Alignment:
Q  14 gtagattagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagat 94  Q
    |||||| ||||| ||||||| || ||||  || ||| |||||| |||||||||||||| |||||||||||||| |||||||    
T  45205027 gtagatcagatggaggagag-cagatcaaaagaggtggaggaagacctagaaaaactataagagaaactattaggaaagat 45204948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 18966722 - 18966779
Alignment:
Q  38 atcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    |||||||| ||| || ||| ||||| || ||||| |||||||||||||||||||||||    
T  18966722 atcactagaggtagaagaagacctaaaacaactataagagaaactattaagaaagatc 18966779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 26356720 - 26356793
Alignment:
Q  22 gatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    |||| ||| |||||| |||||||| ||| | |||| |||||||||||||| |||||||||| ||| ||| ||||    
T  26356720 gatggaggggagtcaaatcactagaggtaggggaagacctagaaaaactataagagaaactgttatgaaggatc 26356793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 44719517 - 44719472
Alignment:
Q  50 tgaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    ||||||| ||||||||||| || || ||||||||||||||||||||    
T  44719517 tgaggaagacctagaaaaaatataaaagaaactattaagaaagatc 44719472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 47147490 - 47147547
Alignment:
Q  38 atcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    |||||||| ||  |||||| |||||||||||||| |  ||||||||||||||||||||    
T  47147490 atcactagaggcagaggaagacctagaaaaactatagaagaaactattaagaaagatc 47147547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 93
Target Start/End: Complemental strand, 50967166 - 50967137
Alignment:
Q  64 aaaaactacaagagaaactattaagaaaga 93  Q
    ||||||||||||||||||||||||||||||    
T  50967166 aaaaactacaagagaaactattaagaaaga 50967137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 53540401 - 53540462
Alignment:
Q  32 agtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaaga 93  Q
    ||||| |||||||| ||  |||||| |||||||||||||| |||| ||||||||| ||||||    
T  53540401 agtcagatcactagaggcagaggaagacctagaaaaactataagataaactattaggaaaga 53540462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 20999130 - 20999174
Alignment:
Q  51 gaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    |||||| |||||||||||||| || | ||||||||||||||||||    
T  20999130 gaggaagacctagaaaaactataatataaactattaagaaagatc 20999174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 58 - 94
Target Start/End: Complemental strand, 33225978 - 33225942
Alignment:
Q  58 acctagaaaaactacaagagaaactattaagaaagat 94  Q
    ||||||||||| || ||||||||||||||||||||||    
T  33225978 acctagaaaaattataagagaaactattaagaaagat 33225942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 29700369 - 29700448
Alignment:
Q  14 gtagattagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaaga 93  Q
    |||||||||||| |||| |||||||||||||| ||| |||||| |||||||||||||| ||||||||||| || ||||||    
T  29700369 gtagattagatggaggatagtcatatcactagaggtagaggaagacctagaaaaactaaaagagaaactaataggaaaga 29700448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 25985612 - 25985687
Alignment:
Q  15 tagattagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaa 90  Q
    ||||| ||||||||| |||||| |||||||| ||| |||||| |||||||||||||| | | ||||||||||||||    
T  25985612 tagatcagatgtaggggagtcaaatcactagaggtagaggaagacctagaaaaactaaatgggaaactattaagaa 25985687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 38178449 - 38178370
Alignment:
Q  14 gtagattagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaaga 93  Q
    |||||| ||||| |||| ||||| ||| |||| ||| |||||| |||||||||||||| ||||||||||||||| |||||    
T  38178449 gtagatcagatggaggatagtcaaatcgctagaggtagaggaagacctagaaaaactataagagaaactattaacaaaga 38178370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 4011213 - 4011257
Alignment:
Q  51 gaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    |||||| |||||||||||||| |||||||||||||||||||||||    
T  4011213 gaggaagacctagaaaaactataagagaaactattaagaaagatc 4011257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 27 - 94
Target Start/End: Complemental strand, 9905058 - 9904991
Alignment:
Q  27 aggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagat 94  Q
    |||||||||| ||||  || ||| || ||| |||||||||||||||||||||||||||||| ||||||    
T  9905058 aggagagtcaaatcaaaagaggtagatgaagacctagaaaaactacaagagaaactattaataaagat 9904991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 32931055 - 32931134
Alignment:
Q  15 tagattagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagat 94  Q
    ||||| ||||| |||| |||||||||||||| ||  |||||| ||||| ||||||||  ||||||||||||| |||||||    
T  32931055 tagatcagatggaggatagtcatatcactagaggcagaggaagacctaaaaaaactatcagagaaactattaggaaagat 32931134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 45512684 - 45512605
Alignment:
Q  14 gtagattagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaaga 93  Q
    ||||||||||||   || ||||| |||||||| ||  |||||| |||||||||||||| |||||||||||||| ||||||    
T  45512684 gtagattagatggcagatagtcaaatcactagaggcagaggaagacctagaaaaactataagagaaactattaggaaaga 45512605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 2216387 - 2216457
Alignment:
Q  20 tagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaa 90  Q
    |||||| |||| ||||| |||||||| ||| |||||| |||||||||||  | ||||||||||||||||||    
T  2216387 tagatggaggatagtcagatcactagaggtagaggaagacctagaaaaaacataagagaaactattaagaa 2216457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 45419328 - 45419406
Alignment:
Q  14 gtagattagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaag 92  Q
    |||||| ||||| |||||||||| |||   || ||| |||||| |||||||||||||| |||||||||||||| |||||    
T  45419328 gtagatcagatggaggagagtcagatctgaagaggtagaggaagacctagaaaaactataagagaaactattaggaaag 45419406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 10080096 - 10080015
Alignment:
Q  14 gtagattagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    |||||| | ||| ||| |||||| |||||||| ||| |||||| ||||||| |||||| |||| ||||| ||||||||||||    
T  10080096 gtagatcaaatgaaggggagtcaaatcactagaggtagaggaagacctagagaaactataagaaaaactgttaagaaagatc 10080015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 23023350 - 23023399
Alignment:
Q  46 gggttgaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    |||| |||||| |||||||||||||| ||||||||||| |||||||||||    
T  23023350 gggtagaggaagacctagaaaaactataagagaaactactaagaaagatc 23023399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 35643758 - 35643714
Alignment:
Q  51 gaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    |||||| |||||||||||||| |||||||| ||||||||||||||    
T  35643758 gaggaagacctagaaaaactataagagaaattattaagaaagatc 35643714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 39967643 - 39967607
Alignment:
Q  59 cctagaaaaactacaagagaaactattaagaaagatc 95  Q
    ||||||||||||| |||||||||||||||||||||||    
T  39967643 cctagaaaaactataagagaaactattaagaaagatc 39967607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 94
Target Start/End: Complemental strand, 5127414 - 5127379
Alignment:
Q  59 cctagaaaaactacaagagaaactattaagaaagat 94  Q
    ||||||||||||| ||||||||||||||||||||||    
T  5127414 cctagaaaaactataagagaaactattaagaaagat 5127379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 95
Target Start/End: Original strand, 5908777 - 5908820
Alignment:
Q  52 aggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    ||||| |||||||||||||| ||||||||||||||| |||||||    
T  5908777 aggaagacctagaaaaactataagagaaactattaaaaaagatc 5908820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 3079792 - 3079712
Alignment:
Q  14 gtagattagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    |||||| ||||| ||| |||| | |||||||| |||  ||||| ||||||| || ||| |||||||||||||||||||||||    
T  3079792 gtagatcagatgaaggggagtgaaatcactagaggtaaaggaagacctagataa-ctataagagaaactattaagaaagatc 3079712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 93
Target Start/End: Complemental strand, 17491805 - 17491764
Alignment:
Q  52 aggaatacctagaaaaactacaagagaaactattaagaaaga 93  Q
    ||||| |||||||||||||  |||||||||||||||||||||    
T  17491805 aggaagacctagaaaaactgtaagagaaactattaagaaaga 17491764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 43733337 - 43733370
Alignment:
Q  51 gaggaatacctagaaaaactacaagagaaactat 84  Q
    |||||| |||||||||||||||||||||||||||    
T  43733337 gaggaagacctagaaaaactacaagagaaactat 43733370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 38392045 - 38392001
Alignment:
Q  51 gaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    |||||| |||||||||||||| | ||||||| |||||||||||||    
T  38392045 gaggaagacctagaaaaactatatgagaaaccattaagaaagatc 38392001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 178608 - 178529
Alignment:
Q  15 tagattagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagat 94  Q
    |||||||||||  ||| |||||||||||||| ||  ||| || |||||||||||||| ||||||||||||||||||||||    
T  178608 tagattagatgacggatagtcatatcactagaggcggagtaagacctagaaaaactataagagaaactattaagaaagat 178529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 1525737 - 1525818
Alignment:
Q  14 gtagattagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    |||||| ||||| |||||||||| |||||||| ||| | || | ||||||||||||||||||||||||||||| ||| ||||    
T  1525737 gtagatcagatggaggagagtcagatcactagaggtaggggtagacctagaaaaactacaagagaaactattaggaaggatc 1525818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 12577049 - 12576968
Alignment:
Q  14 gtagattagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    |||||| ||||| |||  |||| ||||||||| ||  |||||| ||||||||||||||||||| ||||||||||||||||||    
T  12577049 gtagatcagatggagggtagtcctatcactagaggcagaggaagacctagaaaaactacaagataaactattaagaaagatc 12576968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 27990 - 28055
Alignment:
Q  29 gagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagat 94  Q
    |||||||| ||||  || |||||||||| |||||||||||||| |||||||||||||| |||||||    
T  27990 gagagtcagatcaaaagaggttgaggaagacctagaaaaactataagagaaactattaggaaagat 28055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 2713037 - 2713118
Alignment:
Q  14 gtagattagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    |||||| ||||| |||||||||| |||||||| |   | |||| |||||||||||||| |||||||||||||||||| ||||    
T  2713037 gtagatcagatggaggagagtcaaatcactagagtcaggggaagacctagaaaaactataagagaaactattaagaaggatc 2713118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 6859478 - 6859554
Alignment:
Q  18 attagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagat 94  Q
    |||||||| |||| ||||| | |||||| ||  |||||| |||||||||||||| |||||||||||||| |||||||    
T  6859478 attagatggaggatagtcaaaccactagaggaagaggaagacctagaaaaactataagagaaactattaggaaagat 6859554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 11002610 - 11002538
Alignment:
Q  14 gtagattagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactatta 86  Q
    |||||| ||||||||| |||||| |||||||| ||||| || | |||||||||||||| |||| |||||||||    
T  11002610 gtagatcagatgtaggggagtcagatcactagaggttggggtagacctagaaaaactataagacaaactatta 11002538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 15489681 - 15489602
Alignment:
Q  14 gtagattagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaaga 93  Q
    |||||||||||| |||| |||   |||||||| ||  |||||| |||||||||||| | |||||||||||||||||||||    
T  15489681 gtagattagatggaggatagttgaatcactagaggcagaggaagacctagaaaaacaataagagaaactattaagaaaga 15489602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 52 - 95
Target Start/End: Original strand, 38684611 - 38684654
Alignment:
Q  52 aggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||    
T  38684611 aggaagacctagaaaaactacaagagaaacttttaagaaagatc 38684654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 91
Target Start/End: Complemental strand, 7359449 - 7359372
Alignment:
Q  14 gtagattagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaa 91  Q
    |||||| ||||| |||| |||||||||||||| ||  ||||||  ||||||||||| | ||||||||||||| |||||    
T  7359449 gtagatcagatggaggatagtcatatcactagaggcagaggaaagcctagaaaaaccataagagaaactatttagaaa 7359372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 27998566 - 27998615
Alignment:
Q  46 gggttgaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    |||| |||||| |||||||||||||| ||||||||||| |||||||||||    
T  27998566 gggtagaggaagacctagaaaaactataagagaaactactaagaaagatc 27998615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 38578697 - 38578629
Alignment:
Q  27 aggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    |||||||||| ||||||||  || | || | ||||||||||||||||||||||||||||| ||| ||||    
T  38578697 aggagagtcaaatcactagatgtaggggtagacctagaaaaactacaagagaaactattatgaaggatc 38578629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 18698905 - 18698968
Alignment:
Q  32 agtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    ||||| |||||||| ||  ||||||||||||||||||||| |||||||  ||| ||||||||||    
T  18698905 agtcaaatcactagaggcagaggaatacctagaaaaactataagagaatgtatcaagaaagatc 18698968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 94
Target Start/End: Original strand, 29922414 - 29922457
Alignment:
Q  51 gaggaatacctagaaaaactacaagagaaactattaagaaagat 94  Q
    |||||| | |||||||||||| ||||||||||||||||||||||    
T  29922414 gaggaagatctagaaaaactataagagaaactattaagaaagat 29922457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 14749407 - 14749481
Alignment:
Q  21 agatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    ||||| ||| |||||| |||||||  ||  |||||| |||||||||||||| |||||||||||| ||||| ||||    
T  14749407 agatggaggggagtcaaatcactaaaggcagaggaagacctagaaaaactataagagaaactatcaagaaggatc 14749481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 9235166 - 9235220
Alignment:
Q  38 atcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagat 94  Q
    |||||||| ||  |||||| ||||||||||||||  |||||||||||||||||||||    
T  9235166 atcactagaggcagaggaagacctagaaaaacta--agagaaactattaagaaagat 9235220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 6889090 - 6889166
Alignment:
Q  18 attagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagat 94  Q
    |||||||| |||| ||||| | |||| | ||  ||||||  ||||||||||||| |||||||||||||| |||||||    
T  6889090 attagatggaggatagtcaaaccacttgaggaagaggaaggcctagaaaaactataagagaaactattaggaaagat 6889166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 19235173 - 19235092
Alignment:
Q  14 gtagattagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    |||||| ||||| ||| |||||| |||||||| | | |||||| |||||||||||||| ||||||||||||| |||||||||    
T  19235173 gtagatcagatggaggggagtcaaatcactagagatagaggaagacctagaaaaactataagagaaactattgagaaagatc 19235092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 38435045 - 38435126
Alignment:
Q  14 gtagattagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    |||||| | ||| |||| ||||| |||||||| ||  |||| | ||||||||||||||||||||||||||||||||||||||    
T  38435045 gtagatcatatggaggatagtcagatcactagaggcagaggtagacctagaaaaactacaagagaaactattaagaaagatc 38435126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 26784531 - 26784449
Alignment:
Q  12 gggtagattagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagat 94  Q
    |||||||| ||||| |||  ||||| |||||||| ||  ||| || |||||||||||||| ||||||||||||||||||||||    
T  26784531 gggtagataagatggagggtagtcaaatcactagaggcagagaaagacctagaaaaactataagagaaactattaagaaagat 26784449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 33504316 - 33504397
Alignment:
Q  14 gtagattagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    |||||| ||||| |||  ||||| |||||||| ||  ||| || |||||||||||||| |||||||||||||||||||||||    
T  33504316 gtagatcagatggagggtagtcagatcactagaggcagagaaaaacctagaaaaactataagagaaactattaagaaagatc 33504397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 33287551 - 33287595
Alignment:
Q  51 gaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    |||||| |||||||||||||| |||||||||||||||||||||||    
T  33287551 gaggaagacctagaaaaactataagagaaactattaagaaagatc 33287595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 44437909 - 44437829
Alignment:
Q  15 tagattagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    ||||| ||||| ||| |||||| |||||||| ||| | || | |||||||||||||| | |||||||||||||||| ||||    
T  44437909 tagatgagatggaggggagtcagatcactagaggtaggggtagacctagaaaaactatatgagaaactattaagaaggatc 44437829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 18959004 - 18959083
Alignment:
Q  14 gtagattagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaaga 93  Q
    |||||| ||||| |||| ||||| ||||  || ||  |||||| ||||||||||||||||||||||||||| | ||||||    
T  18959004 gtagatcagatggaggatagtcagatcatcagaggcagaggaagacctagaaaaactacaagagaaactataaggaaaga 18959083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 26670888 - 26670941
Alignment:
Q  41 actaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagat 94  Q
    ||||| ||| |||||| ||||| |||||||| || |||||||||||||||||||    
T  26670888 actagaggtagaggaagacctacaaaaactataaaagaaactattaagaaagat 26670941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 37470322 - 37470241
Alignment:
Q  14 gtagattagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    |||||||||||| | |  ||||| |||||||| ||| |||||| ||||  |||||||| |||||||||||||| || |||||    
T  37470322 gtagattagatggaaggtagtcagatcactagtggtagaggaagacctgaaaaaactataagagaaactattaggacagatc 37470241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 37481806 - 37481725
Alignment:
Q  14 gtagattagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    |||||| ||||| ||| |||| | |||||| | ||| || ||| ||| ||||||||||  ||||||||||||||||||||||    
T  37481806 gtagatcagatggaggggagttagatcactggaggtagatgaagaccaagaaaaactattagagaaactattaagaaagatc 37481725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 42543328 - 42543409
Alignment:
Q  14 gtagattagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    |||||| | ||| ||| |||||| |||||||| ||| | || | |||||||||||||| |||||||||||||| ||| ||||    
T  42543328 gtagatcaaatggaggggagtcagatcactagaggtaggggtagacctagaaaaactataagagaaactattaggaaggatc 42543409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 19855592 - 19855636
Alignment:
Q  51 gaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    |||||| ||||||| |||||| || ||||||||||||||||||||    
T  19855592 gaggaagacctagataaactataaaagaaactattaagaaagatc 19855636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 91
Target Start/End: Complemental strand, 9599583 - 9599506
Alignment:
Q  14 gtagattagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaa 91  Q
    |||||| ||||| |||||||||| ||||  || ||| |||||| ||||||||||||||||||||||||||||| ||||    
T  9599583 gtagatcagatggaggagagtcagatcataagaggtagaggaagacctagaaaaactacaagagaaactattaggaaa 9599506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 29577307 - 29577250
Alignment:
Q  38 atcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    |||||||| ||| |||||| ||||||||||||||||| | ||||||||||||||||||    
T  29577307 atcactagaggtagaggaagacctagaaaaactacaacataaactattaagaaagatc 29577250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 32404708 - 32404635
Alignment:
Q  21 agatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagat 94  Q
    ||||| |||| ||||||||||| || ||| |||||| ||||| |||||||| |||||||||||||| |||||||    
T  32404708 agatggaggatagtcatatcacaagaggtagaggaagacctacaaaaactataagagaaactattaggaaagat 32404635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 9509411 - 9509491
Alignment:
Q  14 gtagattagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagat 94  Q
    |||||| ||||| ||||||||||||| |  || ||| |||||| |||||||||||||| |||| ||||||||| |||||||    
T  9509411 gtagatcagatggaggagagtcatattagaagaggtagaggaagacctagaaaaactataagataaactattaggaaagat 9509491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 12231476 - 12231539
Alignment:
Q  32 agtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    ||||| |||||||  ||| ||||||||| ||||||||||| |||||| ||||||||||||||||    
T  12231476 agtcaaatcactaaaggtggaggaatacttagaaaaactataagagagactattaagaaagatc 12231539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 42501219 - 42501282
Alignment:
Q  32 agtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    ||||| |||| ||| ||| |||||| |||||||||||||| |||||||| ||||||||||||||    
T  42501219 agtcaaatcattagaggtagaggaaaacctagaaaaactataagagaaattattaagaaagatc 42501282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 43423830 - 43423893
Alignment:
Q  32 agtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    ||||| |||||||| ||| |||||| ||||||||||| ||||||||| || |||||||||||||    
T  43423830 agtcaaatcactagaggtagaggaagacctagaaaaattacaagagagaccattaagaaagatc 43423893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 12261904 - 12261826
Alignment:
Q  12 gggtagattagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaa 90  Q
    ||||||||  |||| |||||||||| |||||||| ||| | | || |||||||||||||| ||||||||||| ||||||    
T  12261904 gggtagatctgatggaggagagtcaaatcactagaggtggggtaagacctagaaaaactataagagaaactagtaagaa 12261826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 6025698 - 6025779
Alignment:
Q  14 gtagattagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    |||||| |||||||||  ||||| |||||||| ||  |||||| |||||||||||||| |||||| |||| ||| |||||||    
T  6025698 gtagatcagatgtagggtagtcaaatcactagaggcagaggaagacctagaaaaactataagagatactagtaaaaaagatc 6025779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 38868975 - 38869056
Alignment:
Q  14 gtagattagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    |||||||||||| |||  ||||| |||| ||| ||  || ||| |||||||||||||| |||||||| ||||||||||||||    
T  38868975 gtagattagatggagggtagtcaaatcattagaggcagaagaagacctagaaaaactataagagaaattattaagaaagatc 38869056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 89
Target Start/End: Original strand, 51584855 - 51584912
Alignment:
Q  32 agtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaaga 89  Q
    ||||| |||||||| ||| | |||| |||||||||||||| |||||||||||||||||    
T  51584855 agtcaaatcactagaggtaggggaagacctagaaaaactataagagaaactattaaga 51584912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 36339968 - 36339912
Alignment:
Q  38 atcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagat 94  Q
    |||||||| ||| |||||| ||||||||||||||  ||||||||||||| |||||||    
T  36339968 atcactagaggtagaggaagacctagaaaaactatcagagaaactattaggaaagat 36339912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 50771745 - 50771669
Alignment:
Q  14 gtagattagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaa 90  Q
    |||||| ||||| ||| |||||| || ||||| ||| | |||| |||||||||||||| ||| ||||||||||||||    
T  50771745 gtagatcagatggaggggagtcaaatgactagaggtaggggaagacctagaaaaactataagcgaaactattaagaa 50771669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 94
Target Start/End: Complemental strand, 3819008 - 3818965
Alignment:
Q  51 gaggaatacctagaaaaactacaagagaaactattaagaaagat 94  Q
    |||||| |||| ||||||||| ||||||||||||||||||||||    
T  3819008 gaggaagaccttgaaaaactataagagaaactattaagaaagat 3818965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 95
Target Start/End: Complemental strand, 8203279 - 8203242
Alignment:
Q  58 acctagaaaaactacaagagaaactattaagaaagatc 95  Q
    |||||||||||||| ||||||||||||||| |||||||    
T  8203279 acctagaaaaactataagagaaactattaaaaaagatc 8203242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 8343046 - 8342989
Alignment:
Q  38 atcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    |||||||| | | |||||| |||||||||||||| ||||||||| ||||| |||||||    
T  8343046 atcactagagatagaggaagacctagaaaaactataagagaaacaattaataaagatc 8342989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 8796310 - 8796383
Alignment:
Q  22 gatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    |||| |||| ||||| |||||||| ||  |||||| ||| | |||||||  |||||||||||||||||||||||    
T  8796310 gatggaggatagtcagatcactagaggcagaggaagaccaataaaaactttaagagaaactattaagaaagatc 8796383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 95
Target Start/End: Complemental strand, 19969357 - 19969320
Alignment:
Q  58 acctagaaaaactacaagagaaactattaagaaagatc 95  Q
    |||||||||||||| ||||||||||||||| |||||||    
T  19969357 acctagaaaaactataagagaaactattaacaaagatc 19969320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 95
Target Start/End: Original strand, 40416508 - 40416545
Alignment:
Q  58 acctagaaaaactacaagagaaactattaagaaagatc 95  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  40416508 acctagaaaaactataagacaaactattaagaaagatc 40416545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 10272368 - 10272432
Alignment:
Q  31 gagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    |||||| |||||||| ||| | |||| ||||||||||  || |||||||||||||||||| ||||    
T  10272368 gagtcaaatcactagaggtaggggaagacctagaaaacttataagagaaactattaagaaggatc 10272432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 29128920 - 29128956
Alignment:
Q  58 acctagaaaaactacaagagaaactattaagaaagat 94  Q
    |||||||||||||| |||||||||||||| |||||||    
T  29128920 acctagaaaaactataagagaaactattaggaaagat 29128956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 30834129 - 30834085
Alignment:
Q  51 gaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    |||||| |||||||||| ||| |||||||||||||| ||||||||    
T  30834129 gaggaagacctagaaaagctataagagaaactattacgaaagatc 30834085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 11581544 - 11581618
Alignment:
Q  21 agatgtaggagagtcatatcactaggggt-tgaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    ||||||||| |||||| |||||||| ||| |||| || |||||||||||||| |||||||||||||||||||||||    
T  11581544 agatgtaggtgagtcaaatcactagaggtatgag-aagacctagaaaaactataagagaaactattaagaaagatc 11581618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 36820125 - 36820085
Alignment:
Q  55 aatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  36820125 aatacctagaaaaactataagagaaactattaagaaagatc 36820085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 38430941 - 38431012
Alignment:
Q  14 gtagattagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactatt 85  Q
    |||||| ||||| |||||||||| ||||  || ||| |||||| || |||||||||||||||||||||||||    
T  38430941 gtagatcagatggaggagagtcaaatcaaaagaggtagaggaagacttagaaaaactacaagagaaactatt 38431012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 51 - 94
Target Start/End: Complemental strand, 39600833 - 39600790
Alignment:
Q  51 gaggaatacctagaaaaactacaagagaaactattaagaaagat 94  Q
    |||||| |||||||||||||| ||||||||||||||||||||||    
T  39600833 gaggaagacctagaaaaactataagagaaactattaagaaagat 39600790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 94
Target Start/End: Complemental strand, 31261113 - 31261051
Alignment:
Q  32 agtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagat 94  Q
    ||||| |||||||| ||  |||||| |||||||||||||| |||||||||||| |||||||||    
T  31261113 agtcaaatcactagaggcagaggaagacctagaaaaactataagagaaactatcaagaaagat 31261051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 91
Target Start/End: Original strand, 43308699 - 43308732
Alignment:
Q  58 acctagaaaaactacaagagaaactattaagaaa 91  Q
    ||||||||||||||||||||||||||||||||||    
T  43308699 acctagaaaaactacaagagaaactattaagaaa 43308732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 21200659 - 21200722
Alignment:
Q  32 agtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    ||||| |||||||||||  |||||| ||||||||||||||  ||| |||||||| |||||||||    
T  21200659 agtcaaatcactagggggagaggaagacctagaaaaactattagacaaactatttagaaagatc 21200722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 95
Target Start/End: Original strand, 40982027 - 40982070
Alignment:
Q  52 aggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    ||||| |||||||||||||| ||||| |||||||||||||||||    
T  40982027 aggaagacctagaaaaactataagagtaactattaagaaagatc 40982070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 51 - 93
Target Start/End: Complemental strand, 54365127 - 54365085
Alignment:
Q  51 gaggaatacctagaaaaactacaagagaaactattaagaaaga 93  Q
    |||||| |||||||||||||| |||||||||||||| ||||||    
T  54365127 gaggaagacctagaaaaactataagagaaactattaggaaaga 54365085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 95
Target Start/End: Complemental strand, 2340862 - 2340825
Alignment:
Q  58 acctagaaaaactacaagagaaactattaagaaagatc 95  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  2340862 acctaggaaaactataagagaaactattaagaaagatc 2340825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 33755507 - 33755454
Alignment:
Q  38 atcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaa 91  Q
    |||||||| ||  |||||| |||||||||||||| |||||||||||||| ||||    
T  33755507 atcactagaggcagaggaaaacctagaaaaactataagagaaactattaggaaa 33755454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 42510205 - 42510125
Alignment:
Q  14 gtagattagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagat 94  Q
    |||||| ||||| |||| ||||| |||||||| ||   ||||| ||||||||||||||  |||||||| |||| |||||||    
T  42510205 gtagatcagatggaggatagtcagatcactagaggcaaaggaagacctagaaaaactatcagagaaaccattaggaaagat 42510125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 45493844 - 45493800
Alignment:
Q  51 gaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    |||| ||||||||| |||||| || ||||||||||||||||||||    
T  45493844 gagggatacctagataaactataaaagaaactattaagaaagatc 45493800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 28628114 - 28628042
Alignment:
Q  22 gatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagat 94  Q
    |||| |||| ||||| ||||| || ||| |||||| |||||||||||||| |||||||||||||| |||||||    
T  28628114 gatggaggatagtcaaatcacaagaggtagaggaagacctagaaaaactataagagaaactattaggaaagat 28628042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 30814847 - 30814779
Alignment:
Q  27 aggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    |||| ||||| |||||||| ||  |||||| ||||||||| |||| |||||||||||||||||||||||    
T  30814847 aggatagtcagatcactagaggcagaggaagacctagaaacactataagagaaactattaagaaagatc 30814779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 31 - 90
Target Start/End: Original strand, 14593870 - 14593929
Alignment:
Q  31 gagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaa 90  Q
    |||||| |||||||| ||| | |||| |||||||||||||| ||||||||||||||||||    
T  14593870 gagtcaaatcactagaggtaggggaagacctagaaaaactataagagaaactattaagaa 14593929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 45601597 - 45601650
Alignment:
Q  42 ctaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    |||| ||| |||||| |||||||||||||| ||||||||| |||||||||||||    
T  45601597 ctagaggtagaggaagacctagaaaaactataagagaaaccattaagaaagatc 45601650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 12966146 - 12966186
Alignment:
Q  51 gaggaatacctagaaaaactacaagagaaactattaagaaa 91  Q
    |||||| |||||||||||||| |||||||||||||||||||    
T  12966146 gaggaagacctagaaaaactataagagaaactattaagaaa 12966186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 44401290 - 44401234
Alignment:
Q  38 atcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagat 94  Q
    |||||||| ||| |||||  ||||||||||| || ||||||||||||||||||||||    
T  44401290 atcactagaggtggaggatgacctagaaaaattataagagaaactattaagaaagat 44401234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 90
Target Start/End: Original strand, 16013393 - 16013452
Alignment:
Q  31 gagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaa 90  Q
    |||||| ||||| || ||| | |||| |||||||||||||| ||||||||||||||||||    
T  16013393 gagtcaaatcaccagaggtaggggaagacctagaaaaactataagagaaactattaagaa 16013452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 36136859 - 36136937
Alignment:
Q  16 agattagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagat 94  Q
    |||| ||||| |||||||||| ||||  ||  || |||||| |||||||||||||| |||||||||||||  |||||||    
T  36136859 agatcagatggaggagagtcagatcagaagaagtagaggaagacctagaaaaactataagagaaactatttggaaagat 36136937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 1569154 - 1569190
Alignment:
Q  59 cctagaaaaactacaagagaaactattaagaaagatc 95  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  1569154 cctagaaaaactataagagtaactattaagaaagatc 1569190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 58 - 86
Target Start/End: Complemental strand, 18605291 - 18605263
Alignment:
Q  58 acctagaaaaactacaagagaaactatta 86  Q
    |||||||||||||||||||||||||||||    
T  18605291 acctagaaaaactacaagagaaactatta 18605263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 40830332 - 40830376
Alignment:
Q  51 gaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    |||||| |||||||||| ||| |||||||||||||||||| ||||    
T  40830332 gaggaagacctagaaaatctataagagaaactattaagaaggatc 40830376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 42177206 - 42177126
Alignment:
Q  15 tagattagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    ||||| ||||| |||  ||||| |||| ||| ||| |||||| || ||||||| ||| ||||||| |||||||||||||||    
T  42177206 tagataagatgaagggtagtcaaatcattagaggtggaggaagacgtagaaaacctataagagaatctattaagaaagatc 42177126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 45841130 - 45841090
Alignment:
Q  51 gaggaatacctagaaaaactacaagagaaactattaagaaa 91  Q
    |||||| ||||||||||| ||| ||||||||||||||||||    
T  45841130 gaggaacacctagaaaaattacgagagaaactattaagaaa 45841090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 34670 - 34613
Alignment:
Q  38 atcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    |||||||| ||  |||||| |||||||||||||| ||||||||| |||||||||||||    
T  34670 atcactagaggcagaggaagacctagaaaaactataagagaaaccattaagaaagatc 34613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 8364649 - 8364729
Alignment:
Q  14 gtagattagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagat 94  Q
    |||||| ||||| ||||  |||| |||||||| ||  || ||| ||||| |||||||| ||||||||||||||||||||||    
T  8364649 gtagatcagatggaggattgtcagatcactagaggaagatgaagacctaaaaaaactataagagaaactattaagaaagat 8364729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 9593895 - 9593818
Alignment:
Q  14 gtagattagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaaga 93  Q
    |||||| ||||| |||||||||| ||||  || ||| |||||| ||||||||||| || |||||||||||||| ||||||    
T  9593895 gtagatcagatggaggagagtcaaatca--agaggtagaggaagacctagaaaaattataagagaaactattaggaaaga 9593818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 10617406 - 10617342
Alignment:
Q  31 gagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    |||||| |||||||| ||| || ||| |||||||||||||| ||||||||| |||||||| ||||    
T  10617406 gagtcaaatcactagaggtagaagaaaacctagaaaaactataagagaaaccattaagaaggatc 10617342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 5095927 - 5096007
Alignment:
Q  14 gtagattagatgtaggagagtcatatcactaggggttgaggaatacctagaaaaactacaagagaaactattaagaaagat 94  Q
    |||||| ||||| | |||||| | ||||  || ||| |||||| |||||||||||||| |||||||||| ||| |||||||    
T  5095927 gtagatcagatggaagagagttagatcagaagaggtagaggaagacctagaaaaactagaagagaaactcttaggaaagat 5096007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 7080470 - 7080514
Alignment:
Q  51 gaggaatacctagaaaaactacaagagaaactattaagaaagatc 95  Q
    |||||| ||||| |||||||| |||||||||||| ||||||||||    
T  7080470 gaggaaaacctataaaaactataagagaaactatcaagaaagatc 7080514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 31832003 - 31831967
Alignment:
Q  59 cctagaaaaactacaagagaaactattaagaaagatc 95  Q
    |||||||||||||  ||||||||||||||||||||||    
T  31832003 cctagaaaaactatcagagaaactattaagaaagatc 31831967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 62 - 94
Target Start/End: Complemental strand, 160465 - 160433
Alignment:
Q  62 agaaaaactacaagagaaactattaagaaagat 94  Q
    ||||||||||||||||||||||||| |||||||    
T  160465 agaaaaactacaagagaaactattaggaaagat 160433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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