View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14871_low_20 (Length: 317)
Name: NF14871_low_20
Description: NF14871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14871_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 9 - 298
Target Start/End: Complemental strand, 43008827 - 43008543
Alignment:
| Q |
9 |
attattctactgcctaaggaagttataaaggtttgagagaggaggatattgagaattaattgagatggcgtttgcagctgggattaggaagaaagagaag |
108 |
Q |
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| T |
43008827 |
attactctactgcctgaggaagttataaaggtttgagagaggaggatattgagaattaattgagatggggtttgcagctgggattaggaagaaagagaag |
43008728 |
T |
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| Q |
109 |
ttagatttagtttttaaggatctgtgttgtgagatttggttaatatcgacaattatatactatactatatgaggaagagaaaccgcatggaaagtgtcct |
208 |
Q |
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| T |
43008727 |
ttagatttagtttttaaggatctgtgttgtgagatttggttaatatcgacaattatatactatactatatgaggaagagaaaccgcatggaaagtgtcct |
43008628 |
T |
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| Q |
209 |
attaaattccatttcttgacctcccatgccatgccatgccagctacaaccaaggagttgttgacaaggtcaaaaatcaaaaattcagaat |
298 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||| | ||||||||| ||||||||||||| |
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| T |
43008627 |
attaaattccatttcttgacctcccatgccat-----gccagctacaactagggagttgttgaccaagtcaaaaataaaaaattcagaat |
43008543 |
T |
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