View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14871_low_21 (Length: 313)
Name: NF14871_low_21
Description: NF14871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14871_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 28 - 301
Target Start/End: Complemental strand, 8860409 - 8860135
Alignment:
| Q |
28 |
aaatataggtgaatgtgggggaaagaaagagtgggaaggtt-ggtcagagatgcgaatcgtgaggtatgcagatcattgacagagatagtcccttagact |
126 |
Q |
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| T |
8860409 |
aaatataggtgaatgtgggggaaggaaagagtgggaaggtttggtcagagatgcgaatcgtgaggtatgcagatcattgacagagatagtcccttagact |
8860310 |
T |
|
| Q |
127 |
tagactatactactcatcagatttttacatatggttttcacaaacctatggtcgcaattttatgttctattcctagcttagcaatatcatcaaacctcat |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
8860309 |
tagactatactactcatcagatttttacatatggttttcacaaacctatggtcgcaactttgtgttctattcctagcttagcaatatcatcaaacctcac |
8860210 |
T |
|
| Q |
227 |
atgtatgtagtacactttctctattcaaattttgatttttattatactccattcctccttcttctaagtcaagta |
301 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
8860209 |
atatatgtagtacactttctctattcaaattttgatttttattatactccattcctccctcttctaagtcaagta |
8860135 |
T |
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