View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14871_low_27 (Length: 291)
Name: NF14871_low_27
Description: NF14871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14871_low_27 |
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| [»] chr8 (3 HSPs) |
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| [»] scaffold0150 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 6 - 291
Target Start/End: Original strand, 17546391 - 17546676
Alignment:
| Q |
6 |
aaatcgcagtacctaaaacaaatttattacaattttaaggatagtcaatcaaaatcaattcattatttcagaaaattgcacgaaaattaggtaccccaaa |
105 |
Q |
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| T |
17546391 |
aaatcgcagtacctaaaataaatttattacaattttaaggatagtcaatcaaaatcaattcattatttcagaaaattgcacgaaaattaggtaccccaaa |
17546490 |
T |
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| Q |
106 |
ggaacaaccgccaaaaaacaaaatgacatagttttaagtacacttttatcaaaagggaagtaatcctgacgttttcaagattaaataaaagtccttccaa |
205 |
Q |
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| T |
17546491 |
ggaacaaccgccaaaaaacaaaatgacatagttttaagtacacttttatcaaaagggaagtaatcctaacgttttcaagattaaataaaagtccttccaa |
17546590 |
T |
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| Q |
206 |
ttattggccaaatatcaatactccttcttgatgaaaacactcgtcaataccatctttgattgcagagaagccttaagcaactttga |
291 |
Q |
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| T |
17546591 |
ttattggccaaatatcaatactccttcttgatgaaaacactcgtcaataccatctttgattgcagagaagccttaagcaactttga |
17546676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 6 - 291
Target Start/End: Original strand, 17015954 - 17016239
Alignment:
| Q |
6 |
aaatcgcagtacctaaaacaaatttattacaattttaaggatagtcaatcaaaatcaattcattatttcagaaaattgcacgaaaattaggtaccccaaa |
105 |
Q |
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| T |
17015954 |
aaatcgcagtacctaaaataaatttattacaattttaaggatagtcaatcaaaatcaattcattatttcagaaaattgcacgaaaattaggtaccccaaa |
17016053 |
T |
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| Q |
106 |
ggaacaaccgccaaaaaacaaaatgacatagttttaagtacacttttatcaaaagggaagtaatcctgacgttttcaagattaaataaaagtccttccaa |
205 |
Q |
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| T |
17016054 |
ggaacaaccgccaaaaaacaaaatgacatagttttaagtacacttttatcaaaagggaagtaatcctgacgttttcaagattaaatagaagtcattcaaa |
17016153 |
T |
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| Q |
206 |
ttattggccaaatatcaatactccttcttgatgaaaacactcgtcaataccatctttgattgcagagaagccttaagcaactttga |
291 |
Q |
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| T |
17016154 |
ttattggccaaatatcaatactccttcttgatgaaaacactcgtcaataccatctttgattgcagagaagccttaagcaactttga |
17016239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 288
Target Start/End: Complemental strand, 17523053 - 17522994
Alignment:
| Q |
229 |
cttcttgatgaaaacactcgtcaataccatctttgattgcagagaagccttaagcaactt |
288 |
Q |
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| T |
17523053 |
cttcttgagaaaaacacttgtcaagaccatcttggattgcagagaagccttcagcaactt |
17522994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 6 - 143
Target Start/End: Complemental strand, 13786 - 13649
Alignment:
| Q |
6 |
aaatcgcagtacctaaaacaaatttattacaattttaaggatagtcaatcaaaatcaattcattatttcagaaaattgcacgaaaattaggtaccccaaa |
105 |
Q |
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| T |
13786 |
aaatcgcagtacctaaaacaaatttattacaattttaaggatagtcaatcaaaatcaattcattatttcagaaaattgcacgaaaattaggtaccccaaa |
13687 |
T |
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| Q |
106 |
ggaacaaccgccaaaaaacaaaatgacatagttttaag |
143 |
Q |
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| T |
13686 |
ggaacaaccgccaaaaaacaaaatgacatagttttaag |
13649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 52145000 - 52145071
Alignment:
| Q |
217 |
atatcaatactccttcttgatgaaaacactcgtcaataccatctttgattgcagagaagccttaagcaactt |
288 |
Q |
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| T |
52145000 |
atatcaattttccttcttgaggaaaacacttgtcaataccattttggattgcagagaagcctttagcaactt |
52145071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 284
Target Start/End: Original strand, 52152460 - 52152517
Alignment:
| Q |
227 |
tccttcttgatgaaaacactcgtcaataccatctttgattgcagagaagccttaagca |
284 |
Q |
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| T |
52152460 |
tccttcttgatgaaaacactagttaaaaccatctttgtctgcagagaagccttcagca |
52152517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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