View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14871_low_28 (Length: 284)
Name: NF14871_low_28
Description: NF14871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14871_low_28 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 13 - 192
Target Start/End: Complemental strand, 32558048 - 32557869
Alignment:
| Q |
13 |
agcagagatacgcgatccttcaacaaaagaaagacactggttaggaacattcgacactgctgaagaagcagctttagcttacgacagagccgcacgtggc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32558048 |
agcagagatacgcgatccttcaacaaaagaaagacactggttaggaacattcgacactgctgaagaagcagctttagcttacgacagagccgcacgtggc |
32557949 |
T |
|
| Q |
113 |
atgcgtggctcacgtgctcgtaccaattttgtttaccatgatacccctcctggttcttctgttactccaatcctctcacc |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32557948 |
atgcgtggctcacgtgctcgtaccaattttgtttaccatgatacccctcctggttcttctgttactccaatcctctcacc |
32557869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 216 - 263
Target Start/End: Complemental strand, 32557842 - 32557795
Alignment:
| Q |
216 |
ctcaaagtttttacgacctttcttttgttcttcaacctgaaccggttc |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
32557842 |
ctcaaagtttttacgacctttcttttgttcttcaacctgaacccgttc |
32557795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 102
Target Start/End: Complemental strand, 6507735 - 6507659
Alignment:
| Q |
26 |
gatccttcaacaaaagaaagacactggttaggaacattcgacactgctgaagaagcagctttagcttacgacagagc |
102 |
Q |
| |
|
|||||| |||| ||||||||||| |||||||||||||| || |||||| ||||||| ||||| ||||| || ||||| |
|
|
| T |
6507735 |
gatcctgcaactaaagaaagacattggttaggaacatttgatactgctcaagaagctgcttttgcttatgatagagc |
6507659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University