View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14871_low_30 (Length: 237)
Name: NF14871_low_30
Description: NF14871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14871_low_30 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 18001163 - 18000945
Alignment:
| Q |
1 |
atgtgaagggcattctcatccactatatataccggtaaccttgtaacaatccttcatagtattcaatagcctaaatggggtcaacatatttatccgtttt |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18001163 |
atgtgaagggcaatctcatccactatatataccggtaaccttgtaacaatccttcatagtattcaatagcctaaatggggtctacatatttatccgtttt |
18001064 |
T |
|
| Q |
101 |
aactctattctctgtaagctattttcttctttctgtctcaatttatttcataattatttgtcattctgtaagattatataaaattctttcctcaatattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18001063 |
aactctattctctgtaagctattttcttctttctgtctcaatttatttcataattatttgtcattctgtaagattatataaaattctttcctcaatattt |
18000964 |
T |
|
| Q |
201 |
gaaaatataggagatactttt |
221 |
Q |
| |
|
|||| ||||||||||||||| |
|
|
| T |
18000963 |
gaaa--ataggagatactttt |
18000945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University