View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14871_low_33 (Length: 232)
Name: NF14871_low_33
Description: NF14871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14871_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 7977142 - 7977349
Alignment:
| Q |
1 |
ttgtcaagtgtgacacaagaatcttatccaagtaatataactcaaggcaaaataatgatgaacaatacaatttaaaactgcatataa-cacccgattact |
99 |
Q |
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| T |
7977142 |
ttgtcaagtatgacacaagaatcttatccaagtaatataactcaaggcaaaataatgatgaataatacaatttaaaactgcatataaacacccgattact |
7977241 |
T |
|
| Q |
100 |
tgcattacaaataactccaacaattatcctgaacagaccgacgagcttataaacaaatttacttgacaaatttcttaaggaaataaataggaaaacaaaa |
199 |
Q |
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| T |
7977242 |
tgcattacaaataacaccaacaattttcctgaacaaaccgacgagcttataaacaaatttactagacaaatttcttaaggaaataaataggaaaacaaaa |
7977341 |
T |
|
| Q |
200 |
cattttac |
207 |
Q |
| |
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|||||||| |
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| T |
7977342 |
cattttac |
7977349 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 92
Target Start/End: Complemental strand, 8184487 - 8184401
Alignment:
| Q |
6 |
aagtgtgacacaagaatcttatccaagtaatataactcaaggcaaaataatgatgaacaatacaatttaaaactgcatataacaccc |
92 |
Q |
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|||| ||||||||||||||||| || ||||||||| |||||||||| ||||| | ||||||| | ||||| |||||||||||| |
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| T |
8184487 |
aagtatgacacaagaatcttatacatgtaatataaatcaaggcaaagcaatgaaaagcaatacagtgtaaaatatcatataacaccc |
8184401 |
T |
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