View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14871_low_35 (Length: 214)
Name: NF14871_low_35
Description: NF14871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14871_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 3e-96; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 14 - 195
Target Start/End: Complemental strand, 1161476 - 1161295
Alignment:
| Q |
14 |
agagaagaatcacaagactaataatagtatgacctgcaggtcttgctgttaaaataatgaaaaggatactgaacaaatcgatgtacaacattattcattc |
113 |
Q |
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| T |
1161476 |
agagaagaatcacaagactaataatagtatgacctgtaggtcttgctgttaaaataatgaaaaggatactgaacaaatcgatgtacaacattattcattc |
1161377 |
T |
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| Q |
114 |
aactcaaccgggcatatataagatgagtatctaagtatacaagatgcatcattcagcttacatgcatcttcaagaaacacaa |
195 |
Q |
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| T |
1161376 |
aactcaaccgggcatatataagatgagtatctaagtatacaagatgcatcattcagcttacatgcatcttcaagaaacacaa |
1161295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 14 - 125
Target Start/End: Original strand, 879759 - 879883
Alignment:
| Q |
14 |
agagaagaatcacaagactaa-taatagtatgacctgcaggtcttgctgttaaaataatgaaaaggatac---------------tgaacaaatcgatgt |
97 |
Q |
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| T |
879759 |
agagaagaatcacaagactaaataatagtatgacctg---gtcttgctgttataataatgaaaaggatacactcggtctaacctctgaactagtcgatgt |
879855 |
T |
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| Q |
98 |
acaacattattcattcaactcaaccggg |
125 |
Q |
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| T |
879856 |
acaacattattcattcaactcaaccggg |
879883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 879941 - 879994
Alignment:
| Q |
128 |
tatataagatgagtatctaagtatacaagatgcatcattcagcttacatgcatc |
181 |
Q |
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| T |
879941 |
tatataagatgagtacctaagtatacaagatgcatcattctgctgacatgcatc |
879994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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