View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14871_low_36 (Length: 210)
Name: NF14871_low_36
Description: NF14871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14871_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 50 - 196
Target Start/End: Original strand, 23676924 - 23677071
Alignment:
| Q |
50 |
atctactttgattgacttatttgaacttgtctacttgtataagtacttgtgcaattgaa-tccgaacaattccttgaagcttatttgttgatttatccga |
148 |
Q |
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| T |
23676924 |
atctactttgattgacttatttgaacttatctacttgtataagtacttgtgcaattgaactccgaacaattccttgaagcttatttgttgatttatccga |
23677023 |
T |
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| Q |
149 |
ataatgaagcatgaactccgaacaattctgataattattgttgcttct |
196 |
Q |
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| T |
23677024 |
ataatgaagcatgaactccgaacaattctgataattattgttgcttct |
23677071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 23676899 - 23676803
Alignment:
| Q |
1 |
tcaattgaacaataattatcagaactcaaatgaattggaagtgctatggatctactttgattgacttatttgaacttgtctacttgtataagtactt |
97 |
Q |
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| T |
23676899 |
tcaattgaacaataattatcagaactcaaatgaattggaagtgctatggatctactttgattgacttatttgaacttatctacttgtataagtactt |
23676803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 3019931 - 3019887
Alignment:
| Q |
56 |
tttgattgacttatttgaacttgtctacttgtataagtacttgtg |
100 |
Q |
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| T |
3019931 |
tttgattgacttatttgagcttatctactagtataagtacttgtg |
3019887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 12361339 - 12361299
Alignment:
| Q |
59 |
gattgacttatttgaacttgtctacttgtataagtacttgt |
99 |
Q |
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| T |
12361339 |
gattgacttatttgaacttatctactgatataagtacttgt |
12361299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 2790383 - 2790343
Alignment:
| Q |
59 |
gattgacttatttgaacttgtctacttgtataagtacttgt |
99 |
Q |
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||||| ||||||||||||| |||||| |||||||||||||| |
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| T |
2790383 |
gattggcttatttgaacttatctactagtataagtacttgt |
2790343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 100
Target Start/End: Original strand, 23373239 - 23373279
Alignment:
| Q |
60 |
attgacttatttgaacttgtctacttgtataagtacttgtg |
100 |
Q |
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||||||||||||||||||||||||| |||||| ||||||| |
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| T |
23373239 |
attgacttatttgaacttgtctactgatataagcacttgtg |
23373279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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