View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14871_low_4 (Length: 602)
Name: NF14871_low_4
Description: NF14871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14871_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 425; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 14 - 589
Target Start/End: Complemental strand, 34121914 - 34121339
Alignment:
| Q |
14 |
catcactactgagcacccaattcttcaactgatgcagaggcacatccaacccaacagtgaaatcaggttttacaggaggatcacattcacataacctctt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34121914 |
catcactactgagcacccaattcttcaactgatgcagaggcacatccaacccaacagtgaaatcaggttttacaggaggatcacattcacataacctctt |
34121815 |
T |
|
| Q |
114 |
gaaattgaattgtctccccttcaaatctctcactaaagaaagtgtttctttaacatctcttgccgtgttcatcggggtaacaaggctacaggttctagca |
213 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34121814 |
gaaattgaattgtctccccttcaaatctctcactatagaaagtgtctctttaacatctcttgccgtgttcatcggggtaacaaggctacaggttctagca |
34121715 |
T |
|
| Q |
214 |
attttctcttccttagcttgaagttctccttggaagcaaggtagacaacaaaatttccaccaaggaactttggagtgtttcttaactacctttttccctt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
34121714 |
attttctcttccttagcttgaagttctccttggaagcaaggtagacaacaaaatttccaccaaggaactttggagtgtttgttaactacctctttccctt |
34121615 |
T |
|
| Q |
314 |
gttcaagttcttccatttgcctttctgtttcttcctttggacgatccaagttttcatcaaattgtttcatttcttccgctactggcatgattcgttccac |
413 |
Q |
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||| ||||||||||||| || || |||||||||||||||||||||||||||||||| ||| ||| |||||||| ||| ||||| ||||||||||||| |
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| T |
34121614 |
gtttaagttcttccattagcacttttgtttcttcctttggacgatccaagttttcatttaatcgttcaatttcttctgctgctggcttgattcgttccac |
34121515 |
T |
|
| Q |
414 |
gagtgagtcaaggnnnnnnnnnnnnnnnnnaaacttccaacctttggatatttggtttgtgattggttttgctccttcttgaaccactgcgccaagaaat |
513 |
Q |
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| T |
34121514 |
gagagagtcaacgatttttcgtgtttttttgaacttcaaacctttggatatttgatttgtgaatggttttgctccttcttgaaccactgcgccaagaaat |
34121415 |
T |
|
| Q |
514 |
acccctccaaccaactctcctggcataactggatatgaaaaatgaaatgaaatgaacacctgttgatgaagaaact |
589 |
Q |
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| T |
34121414 |
gcccctccaaccaactctcctgccataactggatatgaaaaatgaaatgaaatgaacacctgttgatgaagaaact |
34121339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 162 - 589
Target Start/End: Complemental strand, 34109922 - 34109497
Alignment:
| Q |
162 |
tttaacatctcttgccgtgttcatcggggtaacaaggctacaggttctagcaattttctcttccttagcttgaagttctccttggaagcaaggtagacaa |
261 |
Q |
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||||||||| ||||||||||||||||| |||||||| || | || |||||||||||||||||| || | | || ||||||||||| ||||||| |||| |
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| T |
34109922 |
tttaacatcccttgccgtgttcatcggagtaacaagactgctggatctagcaattttctcttctctatcataaatctctccttggaaacaaggtaaacaa |
34109823 |
T |
|
| Q |
262 |
caaaatttccaccaaggaactttggagtgtttcttaactacctttttcccttgttcaagttcttccatttgcctttctgtttcttcctttggacgatcca |
361 |
Q |
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||| |||||||||| || |||||||||||||| || ||| | | |||||||||| |||||||| ||| | | |||||||||||| | ||| |||||| |
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| T |
34109822 |
caacatttccaccatgggactttggagtgtttgtttactgcatctttcccttgtatcagttcttctattaacatctctgtttcttccatcggatgatcca |
34109723 |
T |
|
| Q |
362 |
agttttcatcaaattgtttcatttcttccgctactggcatgattcgttccacgagtgagtcaaggnnnnnnnnnnnnnnnnnaaacttccaacctttgga |
461 |
Q |
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| || || | ||| || |||||||||| ||||||||| |||| || ||||| || ||||| ||| ||| | || ||||||| |
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| T |
34109722 |
atttctcgtttaatagtctcatttcttcagctactggcgtgatccgatccaccagagagtcgaggtttttgcgtgaggttttgaacatgaaagctttgga |
34109623 |
T |
|
| Q |
462 |
tatttggtttgtgattggttttgctccttcttgaaccactgcgccaagaaatacccctccaaccaactctcctggcataactggatatgaaaaatgaaat |
561 |
Q |
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||| |||||||||| ||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||| ||||||||| |
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| T |
34109622 |
tatctggtttgtgactggttgcatcccttcttgaaccactgcgccaagaaatgcccctccaatcaactctcctgccataactggatatg--aaatgaaat |
34109525 |
T |
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| Q |
562 |
gaaatgaacacctgttgatgaagaaact |
589 |
Q |
| |
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| || ||||||| |||||||||||||| |
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| T |
34109524 |
gggatcaacacctcttgatgaagaaact |
34109497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 34110045 - 34109984
Alignment:
| Q |
30 |
ccaattcttcaactgatgcagaggcacatccaacccaacagtgaaatcaggttttacaggag |
91 |
Q |
| |
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|||| ||||||||||| || ||| | |||||| |||||||||| ||||||||||||||||| |
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| T |
34110045 |
ccaactcttcaactgaatcaaaggaaaatccaatccaacagtgagatcaggttttacaggag |
34109984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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