View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14871_low_5 (Length: 568)
Name: NF14871_low_5
Description: NF14871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14871_low_5 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 309 - 568
Target Start/End: Complemental strand, 40617702 - 40617443
Alignment:
| Q |
309 |
aacatcataaacggtccattcctcacggatgctatttcctcatgcaatggaccttgtagaactctcaacgactgcgctggtcaactcatttgcatcaacg |
408 |
Q |
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| T |
40617702 |
aacatcataaacggtccattcctcacggatgctatttcctcatgcaacggaccttgtagaactctcaacgactgcgctggtcaactcatttgcatcaacg |
40617603 |
T |
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| Q |
409 |
gaaaatgcaacgatgaccctgacgttgggacccgcatctgctcccaaccatcaccttcaccaccaccaccaagcggggatggtgggacttgccgaacctc |
508 |
Q |
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| T |
40617602 |
gaaaatgcaacgatgaccctgacgttggaacccgcatctgctcccaaccatcaccttcaccaccaccaccaagcgggggtggtgggacttgccgaacctc |
40617503 |
T |
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| Q |
509 |
cggcaacttacagtgcgatggacaatcataccctcaatataggtgttctccaccctatgt |
568 |
Q |
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| T |
40617502 |
tggcaacttacagtgcgatggacaatcataccctcaatataggtgttctccaccctatgt |
40617443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 40617997 - 40617729
Alignment:
| Q |
18 |
tatagtttagaatgaattaagtatgattaaaagactcgcaaaaactagtcaaaacttgcaatttgttccaattttcaaaattagatgctcaatttgtatt |
117 |
Q |
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| T |
40617997 |
tatagtttagaatgaattaagtataattaaaagactcgcaaaaactagtcaaaacttgctatttgttccaattttcaaaattagatgctcaatttgtatt |
40617898 |
T |
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| Q |
118 |
ct-agttaggtataataa---ctccatggtgggtacaatacaacatttgggactctatatatatggacatgcaattgccctatatatgccaaagtaacac |
213 |
Q |
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| T |
40617897 |
ctgatttaggtataataataactccatggtgggtacaatacaacatttgggactctatatatatggacatgcaattgccctatatatgccaaagtaacac |
40617798 |
T |
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| Q |
214 |
ttgaagctcgagcacacaaaatctactcactctctattctaatctcaatggctcagatatcaaatcttg |
282 |
Q |
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| T |
40617797 |
ttgaagctcaagcacacaaaaactactcactctctattctaatctcaatggctcagatatcaaatcttg |
40617729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 309 - 440
Target Start/End: Original strand, 40640938 - 40641069
Alignment:
| Q |
309 |
aacatcataaacggtccattcctcacggatgctatttcctcatgcaatggaccttgtagaactctcaacgactgcgctggtcaactcatttgcatcaacg |
408 |
Q |
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| T |
40640938 |
aacatcataaacattccattccttacaaatgttatttcctcatgcaacggaccttgtaaaactctcaacgactgcgctggtcaactcatttgcatcaatg |
40641037 |
T |
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| Q |
409 |
gaaaatgcaacgatgaccctgacgttgggacc |
440 |
Q |
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| T |
40641038 |
gaaaatgcaacgatgaccctgacgttgggacc |
40641069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 323 - 562
Target Start/End: Complemental strand, 40628260 - 40628024
Alignment:
| Q |
323 |
tccattcctcacggatgctatttcctcatgcaatggaccttgtagaactctcaacgactgcgctggtcaactcatttgcatcaacggaaaatgcaacgat |
422 |
Q |
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| T |
40628260 |
tccattcctcacaaatgctatttcctcatgcaatggaccatgcaacactctcaatgattgtgatggtcaactcatttgcatcaacggcaaatgcaacgat |
40628161 |
T |
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| Q |
423 |
gaccctgacgttgggacccgcatctgctcccaaccatcaccttcaccaccaccaccaagcggggatggtgggacttgccgaacctccggcaacttacagt |
522 |
Q |
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| T |
40628160 |
gaccccgacattgggacccacatctgcaccaatccctcaccgt---caccaccaagtggcggtggtggcggcacttgccaatcctccggcaccttacagt |
40628064 |
T |
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| Q |
523 |
gcgatggacaatcataccctcaatataggtgttctccacc |
562 |
Q |
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| T |
40628063 |
gcaaaaaaaaatcataccctcaatataggtgttctccacc |
40628024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 371 - 449
Target Start/End: Complemental strand, 40611003 - 40610925
Alignment:
| Q |
371 |
tctcaacgactgcgctggtcaactcatttgcatcaacggaaaatgcaacgatgaccctgacgttgggacccgcatctgc |
449 |
Q |
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| T |
40611003 |
tctcaacgactgttatggtcaactcatttgcatcaacggaaaatgtaacgatgacccagatattgggacccacatctgc |
40610925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 153
Target Start/End: Complemental strand, 40628503 - 40628426
Alignment:
| Q |
77 |
aatttgttccaattttcaaaattagatgctcaattt-gtattctagttaggtataataactccatggtgggtacaata |
153 |
Q |
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| T |
40628503 |
aatttgttccaattttcaacataggaggctgaattttgttttttagttaggtgtaataactccttgatgggtacaata |
40628426 |
T |
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