View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14871_low_7 (Length: 525)

Name: NF14871_low_7
Description: NF14871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14871_low_7
NF14871_low_7
[»] chr8 (4 HSPs)
chr8 (17-507)||(1423902-1424390)
chr8 (197-308)||(10711976-10712088)
chr8 (248-308)||(44420639-44420699)
chr8 (248-297)||(16985659-16985708)
[»] chr3 (5 HSPs)
chr3 (235-308)||(50056893-50056966)
chr3 (220-308)||(28095952-28096039)
chr3 (196-242)||(50057279-50057325)
chr3 (163-242)||(50057409-50057488)
chr3 (261-308)||(50061382-50061429)
[»] chr7 (2 HSPs)
chr7 (199-284)||(39364335-39364420)
chr7 (248-308)||(29443616-29443676)
[»] chr5 (1 HSPs)
chr5 (163-310)||(1678916-1679066)
[»] chr2 (3 HSPs)
chr2 (200-303)||(25476329-25476432)
chr2 (235-308)||(17508848-17508921)
chr2 (248-308)||(38500219-38500282)
[»] chr4 (2 HSPs)
chr4 (248-308)||(11393149-11393209)
chr4 (248-308)||(11402876-11402936)
[»] scaffold0245 (1 HSPs)
scaffold0245 (261-308)||(12452-12499)
[»] scaffold0118 (1 HSPs)
scaffold0118 (249-308)||(18936-18995)
[»] chr1 (1 HSPs)
chr1 (261-308)||(1286185-1286232)


Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 17 - 507
Target Start/End: Complemental strand, 1424390 - 1423902
Alignment:
Q  17 gatgaacagtggcgtactacggaaagtgcactcggaatgaacagtacttgcgataaacagtttgcatggtgaatagtgttttctaatgaacagggctttt 116  Q
    |||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1424390 gatgaacagtggcgcactatggaaagtgcactcgaaatgaacagtacttgcgataaacagtgtgcatggtgaatagtgttttctaatgaacagggctttt 1424291  T
Q  117 aggatctcaaagagtccgcgatgaaggcaaaaactcacaataaagacgaaaaaagcaaaagtaattgcaaggactgcaactagggtttatgcggaaacaa 216  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||  | || |||||||||||||||||||||||||||||    
T  1424290 aggatctcaaagagtccgcgatgaacgcataaactcacaataaagacgaaaaaagcaaaagtaaccg-aaagactgcaactagggtttatgcggaaacaa 1424192  T
Q  217 gaccccccaagatcaggagctctgatgccacgtgaaaactaaacattatatttcagagataaaaaatgcacaactactaatgtgtttatatatataggga 316  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||  ||||||||||||    
T  1424191 gacctcccaagatcgggagctctgatgccacgtgaaaactaaacattatatttcagagacaaaaaatgtacaactactaatgtgtt--tatatataggga 1424094  T
Q  317 tccagctccccaagaaatattcattttgctactagcagggggaaaatattcatacggagat-aaaaaatagctataatcattttgctactggcaggggag 415  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  1424093 tccagctctccaagaaatattcattttgctactagcaggggaaaaatattcatacggagataaaaaaatagctataatcattttgctactagcaggggag 1423994  T
Q  416 tatgttattcttgtcataggattgaactgaaatcggcaaagctttataagagtatttattgtccctaattaattagcaacactctcttaatt 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1423993 tatgttattcttgtcataggattgaactgaaatcggcaaagctttataagagtacttattgtccctaattaattagcaacactctcttaatt 1423902  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 197 - 308
Target Start/End: Complemental strand, 10712088 - 10711976
Alignment:
Q  197 tagggtttatgcggaaacaagaccccccaagatcaggagctctgatgccacgtgaaaactaaacattatatttcagagataaaa-aatgcacaactacta 295  Q
    ||||||||||||||||||||||| |||||||||   ||| |||||||||| ||||||||| || ||||||| |||||||||||| |||| | | | ||||    
T  10712088 tagggtttatgcggaaacaagactccccaagattgagagttctgatgccatgtgaaaactgaatattatatgtcagagataaaataatgtatatccacta 10711989  T
Q  296 atgtgtttatata 308  Q
    |||| ||||||||    
T  10711988 atgtatttatata 10711976  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 248 - 308
Target Start/End: Complemental strand, 44420699 - 44420639
Alignment:
Q  248 gtgaaaactaaacattatatttcagagataaaaaatgcacaactactaatgtgtttatata 308  Q
    ||||||||| || |||||||||||||||||||  ||  ||||| |||||||||||||||||    
T  44420699 gtgaaaactgaatattatatttcagagataaatgatatacaaccactaatgtgtttatata 44420639  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 297
Target Start/End: Original strand, 16985659 - 16985708
Alignment:
Q  248 gtgaaaactaaacattatatttcagagataaaaaatgcacaactactaat 297  Q
    ||||||||| || ||||||||||||||||||| |||| ||||| ||||||    
T  16985659 gtgaaaactgaatattatatttcagagataaataatgtacaaccactaat 16985708  T

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Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 235 - 308
Target Start/End: Complemental strand, 50056966 - 50056893
Alignment:
Q  235 gctctgatgccacgtgaaaactaaacattatatttcagagataaaaaatgcacaactactaatgtgtttatata 308  Q
    |||||||| ||| ||||||||| || ||||||||||||||||||| |||| ||||| |||||||||||||||||    
T  50056966 gctctgataccatgtgaaaactgaatattatatttcagagataaataatgtacaaccactaatgtgtttatata 50056893  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 220 - 308
Target Start/End: Original strand, 28095952 - 28096039
Alignment:
Q  220 cccccaagatcaggagctctgatgccacgtgaaaactaaacattatatttcagagataaaa-aatgcacaactactaatgtgtttatata 308  Q
    ||||||||||| |||||||  |||||| |||||||| ||| |||||||||||||||||||| |||  ||||| |||||||||||||||||    
T  28095952 cccccaagatcgggagctc--atgccatgtgaaaacaaaatattatatttcagagataaaataatttacaaccactaatgtgtttatata 28096039  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 242
Target Start/End: Complemental strand, 50057325 - 50057279
Alignment:
Q  196 ctagggtttatgcggaaacaagaccccccaagatcaggagctctgat 242  Q
    ||||||||||||||||| ||| ||||||||||||| |||||||||||    
T  50057325 ctagggtttatgcggaagcaacaccccccaagatcgggagctctgat 50057279  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 242
Target Start/End: Complemental strand, 50057488 - 50057409
Alignment:
Q  163 cgaaaaaagcaaaagtaattgcaaggactgcaactagggtttatgcggaaacaagaccccccaagatcaggagctctgat 242  Q
    ||||||||| ||||||||  |||| ||| ||  |||||||||||| |||| |||  |||||||||||| |||||||||||    
T  50057488 cgaaaaaagaaaaagtaaccgcaaagacggcggctagggtttatgtggaagcaacgccccccaagatcgggagctctgat 50057409  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 308
Target Start/End: Complemental strand, 50061429 - 50061382
Alignment:
Q  261 attatatttcagagataaaaaatgcacaactactaatgtgtttatata 308  Q
    ||||||||||||||||||| |||| | ||| |||||||||||||||||    
T  50061429 attatatttcagagataaataatgtagaacgactaatgtgtttatata 50061382  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 199 - 284
Target Start/End: Original strand, 39364335 - 39364420
Alignment:
Q  199 gggtttatgcggaaacaagaccccccaagatcaggagctctgatgccacgtgaaaactaaacattatatttcagagataaaaaatg 284  Q
    |||||||||||||| |||| |||| |||||||||||||||||||  || ||||||||| ||  |||||||||| ||||||| ||||    
T  39364335 gggtttatgcggaagcaaggcccctcaagatcaggagctctgatatcatgtgaaaactgaatgttatatttcaaagataaataatg 39364420  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 248 - 308
Target Start/End: Original strand, 29443616 - 29443676
Alignment:
Q  248 gtgaaaactaaacattatatttcagagataaaaaatgcacaactactaatgtgtttatata 308  Q
    ||||||||| || |||||||||||  |||||| |||  ||||| |||||||||||||||||    
T  29443616 gtgaaaactgaatattatatttcactgataaataatatacaaccactaatgtgtttatata 29443676  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 163 - 310
Target Start/End: Original strand, 1678916 - 1679066
Alignment:
Q  163 cgaaaaaagcaaaagtaattgcaaggactgcaactagggtttatgcggaaacaagaccccccaagatcaggagctctgatgccacgtgaaaactaaacat 262  Q
    ||||||||||||||||||  |||| | | ||  ||| |||||||| |||| |||| ||||| |||||||  ||||  ||||||| ||||||||  |  ||    
T  1678916 cgaaaaaagcaaaagtaaacgcaaaggcggcggctaaggtttatgtggaagcaaggccccctaagatcaaaagcttcgatgccatgtgaaaacatactat 1679015  T
Q  263 tatatttcagagat---aaaaaatgcacaactactaatgtgtttatatata 310  Q
    ||||||||||||||   |||||||| ||||| |||||| ||||||||||||    
T  1679016 tatatttcagagataaaaaaaaatgtacaaccactaatatgtttatatata 1679066  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 200 - 303
Target Start/End: Original strand, 25476329 - 25476432
Alignment:
Q  200 ggtttatgcggaaacaagaccccccaagatcaggagctctgatgccacgtgaaaactaaacattatatttcagagataaaaaatgcacaactactaatgt 299  Q
    ||||||||||||| |||| ||||    ||||  |||||||||||||| ||||||||| || ||||||||||| ||||||| |||  ||||| ||||||||    
T  25476329 ggtttatgcggaagcaaggcccctagtgatcgagagctctgatgccatgtgaaaactgaagattatatttcaaagataaataatttacaaccactaatgt 25476428  T
Q  300 gttt 303  Q
    ||||    
T  25476429 gttt 25476432  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 235 - 308
Target Start/End: Complemental strand, 17508921 - 17508848
Alignment:
Q  235 gctctgatgccacgtgaaaactaaacattatatttcagagataaaaaatgcacaactactaatgtgtttatata 308  Q
    |||||||| ||| ||||||| | || ||||||||||||| ||||| |||| ||||| |||||||||||||||||    
T  17508921 gctctgataccatgtgaaaattgaatattatatttcagaaataaataatgtacaaccactaatgtgtttatata 17508848  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 308
Target Start/End: Complemental strand, 38500282 - 38500219
Alignment:
Q  248 gtgaaaactaaacattatatttcaga---gataaaaaatgcacaactactaatgtgtttatata 308  Q
    ||||||||| || |||||||||||||   |||||| |||| ||||| |||||||||||||||||    
T  38500282 gtgaaaactgaatattatatttcagacgagataaataatgtacaaccactaatgtgtttatata 38500219  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 248 - 308
Target Start/End: Complemental strand, 11393209 - 11393149
Alignment:
Q  248 gtgaaaactaaacattatatttcagagataaaaaatgcacaactactaatgtgtttatata 308  Q
    ||||||||| || ||||||||||||||||||| |||| ||||| ||| |||||||||||||    
T  11393209 gtgaaaacttaatattatatttcagagataaataatgtacaaccactgatgtgtttatata 11393149  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 248 - 308
Target Start/End: Complemental strand, 11402936 - 11402876
Alignment:
Q  248 gtgaaaactaaacattatatttcagagataaaaaatgcacaactactaatgtgtttatata 308  Q
    ||||||||| || ||||||||||||||||||| |||| ||||| ||| |||||||||||||    
T  11402936 gtgaaaacttaatattatatttcagagataaataatgtacaaccactgatgtgtttatata 11402876  T

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Target: scaffold0245 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 261 - 308
Target Start/End: Original strand, 12452 - 12499
Alignment:
Q  261 attatatttcagagataaaaaatgcacaactactaatgtgtttatata 308  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||||||    
T  12452 attatatttcagagataaataatgtacaaccactaatgtgtttatata 12499  T

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Target: scaffold0118 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 249 - 308
Target Start/End: Complemental strand, 18995 - 18936
Alignment:
Q  249 tgaaaactaaacattatatttcagagataaaaaatgcacaactactaatgtgtttatata 308  Q
    ||||||||||| ||||||||| ||||||||| |||| ||||| | |||||||||||||||    
T  18995 tgaaaactaaatattatattttagagataaataatgtacaaccattaatgtgtttatata 18936  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 261 - 308
Target Start/End: Original strand, 1286185 - 1286232
Alignment:
Q  261 attatatttcagagataaaaaatgcacaactactaatgtgtttatata 308  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||||||    
T  1286185 attatatttcagagataaataatgtacaaccactaatgtgtttatata 1286232  T

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