View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14871_low_8 (Length: 472)
Name: NF14871_low_8
Description: NF14871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14871_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 399; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 9 - 419
Target Start/End: Original strand, 16977523 - 16977933
Alignment:
| Q |
9 |
acatcatcatcagagacattttgcactgccttttgtatatctgatatttccttctggtttgaagaagaagaagaaccctttattcgatctgaatgctcca |
108 |
Q |
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| T |
16977523 |
acatcatcatcagagacattttgcactgccctttgtatatctgatatttccttctggtttgaagaagaagaagaaccctttattcgatctgaatgctcca |
16977622 |
T |
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| Q |
109 |
cttcatcagtgtgtacaaaagaatccttcttcttctcaaaggcattagaaattgctacactaccataatctgaatgctcaacttcatcattgtttacaga |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16977623 |
cttcatcagtgtgtacaaaagaatccttcttcttctcaaaggcattagaaattgctacactaccataatctgaatgctcaacttcatcattgtttacaga |
16977722 |
T |
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| Q |
209 |
aggatttttatcgctcatctcctcaccataatctgaatgctccatttcaccattgtttacataaggacttttatccttcatctcctcattctttgtggaa |
308 |
Q |
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| T |
16977723 |
aggatttttatcgctcatctcctcaccataatctgaatgctccatttcaccattgtttacagaaggacttttatccttcatctcctcattctttgtggaa |
16977822 |
T |
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| Q |
309 |
gatggaatattttcaacgtttatctcctcatcattcaatccagaaattccactttgtttatccatcacctctctaaccaaatcctcgaccacattcaagt |
408 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16977823 |
gatggactattttcaacgtttatctcctcatcattcaatccagaaattccactttgtttatccatcacctctctaaccaaatcctcgaccacattcaagt |
16977922 |
T |
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| Q |
409 |
attttctaccg |
419 |
Q |
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| T |
16977923 |
attttctaccg |
16977933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 137 - 233
Target Start/End: Complemental strand, 10601969 - 10601873
Alignment:
| Q |
137 |
cttcttctcaaaggcattagaaattgctacactaccataatctgaatgctcaacttcatcattgtttacagaaggatttttatcgctcatctcctca |
233 |
Q |
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| T |
10601969 |
cttcttctcaaaggtagtagaagttgctacactaccataatctgaatgctccacttcatcattctttatagaaggacttttatccttcacctcctca |
10601873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 233 - 298
Target Start/End: Complemental strand, 10601936 - 10601871
Alignment:
| Q |
233 |
accataatctgaatgctccatttcaccattgtttacataaggacttttatccttcatctcctcatt |
298 |
Q |
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| T |
10601936 |
accataatctgaatgctccacttcatcattctttatagaaggacttttatccttcacctcctcatt |
10601871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 300 - 387
Target Start/End: Original strand, 16968577 - 16968664
Alignment:
| Q |
300 |
tttgtggaagatggaatattttcaacgtttatctcctcatcattcaatccagaaattccactttgtttatccatcacctctctaacca |
387 |
Q |
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||||||||||||||| |||| ||||| || | ||| ||||||||| ||||||||||||||||| ||||||| |||||||| |||| |
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| T |
16968577 |
tttgtggaagatggactattctcaacattcacctcttcatcattcctctcagaaattccactttgtctatccattacctctctcacca |
16968664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 416
Target Start/End: Original strand, 17008001 - 17008068
Alignment:
| Q |
349 |
cagaaattccactttgtttatccatcacctctctaaccaaatcctcgaccacattcaagtattttcta |
416 |
Q |
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|||||||||||| |||| |||||||||||||||||| ||| | ||| |||| |||||| | ||||||| |
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| T |
17008001 |
cagaaattccacattgtctatccatcacctctctaatcaacttctccaccatattcaaatcttttcta |
17008068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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