View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14871_low_9 (Length: 447)
Name: NF14871_low_9
Description: NF14871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14871_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 20 - 430
Target Start/End: Complemental strand, 5445566 - 5445156
Alignment:
| Q |
20 |
aggagcagagataacagcattgttcacttcatgacccaaataagtttcagcaacttcctttaacttagacaacaccatggaagatatctcttgaggtgaa |
119 |
Q |
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| T |
5445566 |
aggaacagtgataacagcattgttcacttcatgacccaaataagtttcagcaacttcctttaacttagacaacaccatggaagatatctcttgaggtgaa |
5445467 |
T |
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| Q |
120 |
aaatgtttctcttggcctttgtaattgacaacaatcatgggtttgtctttgtggttcggaacaactttaaaaggccaaagctttatgtcttgttggactg |
219 |
Q |
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| T |
5445466 |
aaatgtttctcttggcctttgtaattgacaacaatcatgggtttgtctttgtggttcggaacaactttaaaaggccaaagctttatgtcttgttggactg |
5445367 |
T |
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| Q |
220 |
tttggtcagagaatcgacggccaatcagacgtttggcatcaaaaacagtgttgtggggatttttggctaattggtttttggcagcatcgcctattaatct |
319 |
Q |
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| T |
5445366 |
tttggtcagagaatcgacggccaatcagacgtttggcatcaaaaacagtgttgtggggatatttggctaattggtttttggcagcatcgcctattaatct |
5445267 |
T |
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| Q |
320 |
ttcagtgtcggtgaaggcaacgtaagaaggggtgacacggttcccttggtcgtttggaatgatctcaacacgattgtttcgccacactgcaatgcagctg |
419 |
Q |
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| T |
5445266 |
ttcagtgtcagtgaaggcaacgtaagaaggggtgacacggttcccttggtcgtttggaatgatctcaacacgattgtttcgccacactgcaatgcagctg |
5445167 |
T |
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| Q |
420 |
tagcttgtacc |
430 |
Q |
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| T |
5445166 |
tagcttgtacc |
5445156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 364 - 427
Target Start/End: Original strand, 5440993 - 5441056
Alignment:
| Q |
364 |
cttggtcgtttggaatgatctcaacacgattgtttcgccacactgcaatgcagctgtagcttgt |
427 |
Q |
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|||||||||||||||||||||||||| |||||| | ||||| || ||||||||||||| |||| |
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| T |
5440993 |
cttggtcgtttggaatgatctcaacatgattgtgttgccactctcaaatgcagctgtaggttgt |
5441056 |
T |
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