View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14872_high_2 (Length: 350)
Name: NF14872_high_2
Description: NF14872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14872_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 165 - 337
Target Start/End: Original strand, 8905127 - 8905298
Alignment:
| Q |
165 |
ttcgaacttcaaactacttttaagatgaatttataactactaaactacttgacnnnnnnngaaaatctaaaacatacaatacctcgtaaaacaatgcaat |
264 |
Q |
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| T |
8905127 |
ttcgaacctcagactacttttaagatgaatttataactactagactacttgacaaaaaa-gaaaatctaaaacatacaatacctcgtaaaacaatgcaat |
8905225 |
T |
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| Q |
265 |
agaagaaggtctaataaacacacaaggatggaacaatcctttaatccacatagcctcgaccgggggctattgt |
337 |
Q |
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| T |
8905226 |
agaagaaggtctaataaacacacaaggatggaacaatcctttaatccacatagcctcaaccgggggctattgt |
8905298 |
T |
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Target: chr7; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 11 - 134
Target Start/End: Original strand, 8904942 - 8905064
Alignment:
| Q |
11 |
aatcacaaattcacatcggtcttgaaactttaggcgtaaagcaaccgtggcagataaagtctgacacctcacctaagatctaaaatgtacatcatgtgag |
110 |
Q |
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| T |
8904942 |
aatcacaaattcacatcggtcttgaaactttaggcgtaaagcaaccgtggca-ataaagtccgacacctcacctaagatctaaaatgtacatcatgtgag |
8905040 |
T |
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| Q |
111 |
tttaattcattagataagggacat |
134 |
Q |
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| T |
8905041 |
tttaattcattagataagggacat |
8905064 |
T |
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