View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14872_high_5 (Length: 204)
Name: NF14872_high_5
Description: NF14872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14872_high_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 4e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 52685463 - 52685666
Alignment:
| Q |
1 |
ttagttttggatgttaagtat-gagaaaagttgagttgtannnnnnnggagacaagtaggagatgtgaaatattaaaccattttgacatgttatcaattg |
99 |
Q |
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| T |
52685463 |
ttagttttggatgttaagtatcgagaaaagttgagttgtattttttta-agacaaataggagatgtgaaatcttaaaccattttgacatgttatcaattg |
52685561 |
T |
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| Q |
100 |
atttaaaatccgtaaattaccaaattcacaaatcaccgtcttcttcaaattgaaatcccaaatcctcatgcaataaggagaagatgatttaagtaaaata |
199 |
Q |
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| T |
52685562 |
atttaaaatccgtaaattaccaaattcacaaatcaccgtcttcttcaaattgaaatcccaaatcctcatgcaataaggagaagatgatttaagtaaaata |
52685661 |
T |
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| Q |
200 |
gaaga |
204 |
Q |
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| T |
52685662 |
gaaga |
52685666 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 136
Target Start/End: Original strand, 6067228 - 6067285
Alignment:
| Q |
79 |
attttgacatgttatcaattgatttaaaatccgtaaattaccaaattcacaaatcacc |
136 |
Q |
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| T |
6067228 |
attttaacatgttatcaattgattttaaatctctaaattcccaaattctcaaaccacc |
6067285 |
T |
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