View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14872_low_1 (Length: 374)
Name: NF14872_low_1
Description: NF14872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14872_low_1 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 17 - 374
Target Start/End: Complemental strand, 7435256 - 7434899
Alignment:
| Q |
17 |
aaaagaatcgtggactaagctctacattgttgggttgttgcctcatgttaagtatcccatcgaagcagggaaaaatggtgacatattcttcatnnnnnnn |
116 |
Q |
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| T |
7435256 |
aaaagaatcgtggactaagctcttcattgttgggtcgttgcctcatgttaagtatcccatcgaagcagggaaaaatggtgacatattcttcataaaaaaa |
7435157 |
T |
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| Q |
117 |
gatggagaactagcttgttttaatttggatacacagacgattaaggagcttggtgtcgaaggagacatgagtcaaatagtaatttataaggaaagttttc |
216 |
Q |
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| T |
7435156 |
gatggagaactagcttgttttaatttggatacacagacgattaaggagcttggtgtcgaaggagacatgagtcaaatagtaatttataaggaaagttttc |
7435057 |
T |
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| Q |
217 |
attcaattagaagcatacataattaactttttctgtttgttttgacccaagaggactgttatggaggtttttactttttgtattggaagtggcttgccag |
316 |
Q |
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| T |
7435056 |
attcaattagaagcatacataattaactttttctgtttgatttgacccaagaggactgttatggaggttcttactttttgtattggaagtggcttgccgg |
7434957 |
T |
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| Q |
317 |
ttgcacatatcatattcgtgatcaagtgcttggcaaattaagtaaccatttgataata |
374 |
Q |
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| T |
7434956 |
ttgcacatatcatatttgtgatcaagtgcttggcaaattaagtaaccatttgataata |
7434899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 7524085 - 7523854
Alignment:
| Q |
17 |
aaaagaatcgtggactaagctctacattgttgggttgttgcctcatgttaagtatcccatcgaagcagggaaaaatggtgacatattcttcatnnnnnnn |
116 |
Q |
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| T |
7524085 |
aaaagaatcttggactaagctcttcattgttgggccattgcctcatgttaagtatcccatcgaagcagggaaaaatggtgatatattcttcataaaaaaa |
7523986 |
T |
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| Q |
117 |
gatggagaactagcttgttttaatttggatacacagacgattaaggagcttggtgtcgaaggagacatgagtcaaatagtaatttataaggaaagttttc |
216 |
Q |
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| T |
7523985 |
gatggagaactggcttgttttaatttagatacacagacgattaaggagcttggtgtcgaaggagacatgagtcaaatagtaatttataaggaaagttttc |
7523886 |
T |
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| Q |
217 |
attcaattagaagcatacataattaacttttt |
248 |
Q |
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| T |
7523885 |
tttcaattagaagcatacataattaatttttt |
7523854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 28 - 227
Target Start/End: Original strand, 7520599 - 7520797
Alignment:
| Q |
28 |
ggactaagctctacattgttgggttgttgcctcatgttaagtatcccatcgaagcagggaaaaatggtgacatattcttcatnnnnnnngatggagaact |
127 |
Q |
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||||||| |||| |||||| || | |||||||||||| ||||||| || ||||||||||| ||| |||||||||||||||| |||||||||| |
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| T |
7520599 |
ggactaaactcttcattgtcggatcattgcctcatgttgagtatccaattgaagcagggaataatagtgacatattcttcataaaaaaa-atggagaact |
7520697 |
T |
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| Q |
128 |
agcttgttttaatttggatacacagacgattaaggagcttggtgtcgaaggagacatgagtcaaatagtaatttataaggaaagttttcattcaattaga |
227 |
Q |
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| T |
7520698 |
atcttgttttattttggataccaagacgactaaggagcttggtgctgagggagacattagtcagatagtaatttataaggaaagctttctttcgattaga |
7520797 |
T |
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