View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14872_low_3 (Length: 264)
Name: NF14872_low_3
Description: NF14872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14872_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 3568162 - 3568406
Alignment:
| Q |
1 |
cgcgacaaagacaaaggaaagaagaaggtggaggatgaataaatttttgttcccattaagcatgtggaagtgacaacacctttgtccactgcgactgttg |
100 |
Q |
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| T |
3568162 |
cgcgacaaagacaaaggaaagaagaaggtggaggatgaataaatttttgttcccattaagcatgtggaagtgacaacacctttgtccactgcgactgttg |
3568261 |
T |
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| Q |
101 |
atgttaatcaagaaaaatgttcttcgtctgatgttccttccaaggatatttccgccaactcctttagcttcaccttgaagaatgtgtcggatcatattcc |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3568262 |
atgttaatcaagaaaaatcttcttcgtctgatgttccttccaaggatatttccgccaactcctttagcttcaccttgaagaatgtgtcggatcatattcc |
3568361 |
T |
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| Q |
201 |
tcaaggtagacttcctcgtcctgatatccatgttttggagttggc |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3568362 |
tcaaggtagacttcctcgtcctgatatccatgttttggagttggc |
3568406 |
T |
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