View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14872_low_4 (Length: 258)

Name: NF14872_low_4

Description: NF14872

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF14872_low_4

[»] chr3 (2 HSPs)

Target: chr3 (Bit Score: 96; Significance: 4e-47; HSPs: 2)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 96; E-Value: 4e-47

Query Start/End: Original strand, 21 - 120

Target Start/End: Complemental strand, 38826221 - 38826122

Alignment:

Q	21	ttggtatgtctacttgttgcactagatcaatgaaagcttcatccgttagttttttgttaactttttgatcttattttgtagcgttgaccatgctcattgc	120	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	38826221	ttggtatgtctacttgttgcactagatcaatgaaagcttcatccgttagttttttgttaactttttgatcttattttgtagcgttgaccatgttcattgc	38826122	T

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Target: chr3; HSP #2

Raw Score: 86; E-Value: 3e-41

Query Start/End: Original strand, 116 - 230

Target Start/End: Complemental strand, 38821078 - 38820964

Alignment:

Q	116	attgccattagtatcccattctttggttctcttcttggattcctcggtgggtttgccttagccccaacaagttacttcgtaagcaaaccannnnnnncat	215	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|
T	38821078	attgccattagtgtcccattctttggttctcttcttggattcctcggagggtttgccttagccccaacaagttacttcgtaagcaaaccatttttttcat	38820979	T

Q	216	actatcttattcaat	230	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	38820978	actatcttattcaat	38820964	T

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