View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14873_high_1 (Length: 358)
Name: NF14873_high_1
Description: NF14873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14873_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 29006042 - 29006383
Alignment:
| Q |
1 |
acccatactatacatctcatatcaaactaagaatgagaagttgtcacataaagcaaacaaatgtaactctgattcctagtggccccgacataaaaaataa |
100 |
Q |
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| T |
29006042 |
acccatactatacatctcatatcaaactaagaatgagaagttgtcacataaagcaaacaaatgtaactctgattcctagtggccccgacataaaaaataa |
29006141 |
T |
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| Q |
101 |
ataatgaatccaaagacaagggtcagggggtcaagaagcaagttggagctttaattgacaccagttgtctacatacctgttgtttatggtgataataatg |
200 |
Q |
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| T |
29006142 |
ataatgaatccaaagacaagggtcagggggtcaagaagcaagttggagctttaattgacaccagttgtctacatacctgttgtttatggtgataataatg |
29006241 |
T |
|
| Q |
201 |
tctaaatattcattaagaagaatgtgctaggtagatgacctaagaataagactcaatcatgtttgccattataaatgacatgtctcttttcttattaaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29006242 |
tctaaatattcattaagaagaatgtgctaggtagatgacctaagaataagactcaatcatgtttgccattataaatgacatgtctcttttcttattaaac |
29006341 |
T |
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| Q |
301 |
actaatggaaacaactcacaaaatgcttggacacgttgttat |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
29006342 |
actaatggaaacaactcacaaaatgcttggacacgttgttat |
29006383 |
T |
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