View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14873_low_2 (Length: 325)
Name: NF14873_low_2
Description: NF14873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14873_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 74; Significance: 6e-34; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 232 - 309
Target Start/End: Complemental strand, 32047950 - 32047873
Alignment:
| Q |
232 |
cggagaaattttattaaagataagcccgcacaagacaaacaacagtttgctacgaacaagataaaaacaagtcataaa |
309 |
Q |
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| T |
32047950 |
cggagaaattttattaaagataagcccgcccaagacaaacaacagtttgctacgaacaagataaaaacaagtcataaa |
32047873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 32048176 - 32048127
Alignment:
| Q |
1 |
gtccattttatcttaacgttaagttggaataatcaatatgtggagacaca |
50 |
Q |
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| T |
32048176 |
gtccattttatcttaacgttaagttggaataatcaatatgtggagacaca |
32048127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 32048060 - 32048020
Alignment:
| Q |
117 |
gaattaaattttattttcattgaaacaacatttcacgtttg |
157 |
Q |
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| T |
32048060 |
gaattaaattttattttcattgaaacaacatttcacgtttg |
32048020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 11113472 - 11113509
Alignment:
| Q |
119 |
attaaattttattttcattgaaacaacatttcacgttt |
156 |
Q |
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| T |
11113472 |
attaagttttattttcaatgaaacaacatttcacgttt |
11113509 |
T |
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