View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14873_low_6 (Length: 239)

Name: NF14873_low_6
Description: NF14873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14873_low_6
NF14873_low_6
[»] chr3 (3 HSPs)
chr3 (108-193)||(32898780-32898865)
chr3 (11-102)||(32898934-32899025)
chr3 (137-181)||(36443009-36443053)


Alignment Details
Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 108 - 193
Target Start/End: Complemental strand, 32898865 - 32898780
Alignment:
Q  108 agatattagtagaagctattagttacttattagaataacatataaccataaaatgatacaaatttaaacttaaacgaaagaggttt 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32898865 agatattagtagaagctattagttacttattagaataacatataaccataaaatgatacaaatttaaacttaaacgaaagaggttt 32898780  T

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Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 32899025 - 32898934
Alignment:
Q  11 gcacagaccaaaaatcagaccacactttcaactaataacaataaatttgaattaattatatgagacaaaggttacaaaggcatacatgttta 102  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  32899025 gcacagaccaaaaatcagatcacactttcaactaataacaataaatttgaattaattatatgagacaaaggttacagaggcatacatgttta 32898934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 181
Target Start/End: Original strand, 36443009 - 36443053
Alignment:
Q  137 ttagaataacatataaccataaaatgatacaaatttaaacttaaa 181  Q
    ||||||||||| ||||||||||||||| | || ||||||||||||    
T  36443009 ttagaataacacataaccataaaatgacaaaattttaaacttaaa 36443053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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