View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14874_high_3 (Length: 355)
Name: NF14874_high_3
Description: NF14874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14874_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 338
Target Start/End: Complemental strand, 37309822 - 37309502
Alignment:
| Q |
19 |
tatctgacatatatatagataactaataatagaagtccaaatattcctgctattattataaccacagttgcacccttagcaagacctgttcgtatagaac |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37309822 |
tatctgacatatatatagataactaataatagaagtccaaatattcctgctattattatacccacagttgcacccttagcaagacctgttcgtatagaac |
37309723 |
T |
|
| Q |
119 |
cagctttaaattcaggcattgaccttttttacattctcatattgtttgtgaacaa-gaacaaccatcaagctaaaaacataatcatcataatatacctac |
217 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37309722 |
aaactttaaattcaggcattgaccttttttacattctcatattgtttgtgaacaaagaacaaccatcaagctaaaaacataatcatcataatatacctac |
37309623 |
T |
|
| Q |
218 |
ctgatctgcaagagggaaaaaaggaaaatgaaagttagaaaactagaatcaaacatgaagcaatacatacttctataaagcattcaaaatgaaaagtgag |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
37309622 |
ctgatctgcaagagggaaaaaaggaaaatgaaagttagaaaactagaatcaaacatgaagcaatacatgcttctataaagcattcaaaatgaaaagcgag |
37309523 |
T |
|
| Q |
318 |
atagtcaaaattacccaccta |
338 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
37309522 |
ataatcaaaattacccaccta |
37309502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 26 - 174
Target Start/End: Complemental strand, 37237929 - 37237777
Alignment:
| Q |
26 |
catatatatagataactaataatagaagtccaaatattcctgctattattataaccacagttgcacccttagcaagacctgttcgtatagaaccagcttt |
125 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| || |||| | |||| || ||||||||||| ||||| | ||| |||||| ||| |
|
|
| T |
37237929 |
catatatatagataacaaataatagaagtccaaatattcctgccatagctataccaacagctgaacccttagcaatacctgcttatattgaaccaaattt |
37237830 |
T |
|
| Q |
126 |
aaattc-----aggcattgaccttttttacattctcatattgtttgtgaacaag |
174 |
Q |
| |
|
|| || | ||||||||||||| | |||||||||||| |||||||||||| |
|
|
| T |
37237829 |
aagctcacaggaagcattgaccttttgtccattctcatatt-tttgtgaacaag |
37237777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University